PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751258
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 1130aa    MW: 125766 Da    PI: 8.288
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751258genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.1e-09529577348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +lv++v ++G g W+ I +       +Rt  ++k++w+++l
        676751258 529 AWTLSEVTKLVEGVSKYGAGKWSEIKKLSFsshSHRTSVDLKDKWRNLL 577
                      7**************************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.646522581IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-13524583IPR009057Homeodomain-like
SMARTSM007171.1E-9526579IPR001005SANT/Myb domain
CDDcd116601.47E-20528578No hitNo description
SuperFamilySSF466893.23E-16528587IPR009057Homeodomain-like
PfamPF139218.7E-7530585No hitNo description
PROSITE profilePS5171042.627431019IPR031167OBG-type guanine nucleotide-binding (G) domain
PfamPF019265.2E-20744859IPR006073GTP binding domain
Gene3DG3DSA:3.40.50.3008.2E-40744852IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd018962.53E-1437441026No hitNo description
TIGRFAMsTIGR002313.9E-20744894IPR005225Small GTP-binding protein domain
SuperFamilySSF525402.12E-49744951IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003261.1E-28745765IPR006073GTP binding domain
PRINTSPR003261.1E-28766784IPR006073GTP binding domain
PRINTSPR003261.1E-28793808IPR006073GTP binding domain
PROSITE patternPS009050795808IPR006074GTP1/OBG, conserved site
PRINTSPR003261.1E-28810828IPR006073GTP binding domain
PfamPF168975.2E-36864953IPR031662GTP binding protein, second domain
Gene3DG3DSA:3.40.50.3008.2E-40919932IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3008.2E-409931034IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF812712.88E-1510151097IPR012676TGS-like
CDDcd016669.59E-4310201097No hitNo description
PfamPF028246.2E-2410211097IPR004095TGS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1130 aa     Download sequence    Send to blast
MGTVVGAVED CREMFEGSAQ TRIIPFSSSN QIGNPVAYKL VRVAGDGRLV PATDEEILEV  60
NETDMHTASD ACQSVGYLPA EGLPSRLSQL EETFEVINSG LLLSDNVEPS TDQVNSQPEY  120
IEEMLQKVEQ EERFVMIHGS HMLSTPPDAN IQCSSENNML DEDQIHHEPL LQQPIPFSSD  180
VQNGCEVDQS NTVEPCSNAA ASPKETALPG AAAQKPDFSL VRGEICLNNL PIKALQETFR  240
ATFGRETTVK DKTWLKRRIT MGLTNSCDVR ATNLTIKDNK LVGNQDKPND VADAVSKDMG  300
DNVRATNLKD APSSTGRVNG HSNASGQSLS LNHYFPTEDS TSEERAAKRV RKPTRRYIEE  360
LSETDEKQQN DKSVVPSKDQ KLSENSEVRS ISVSSGKRVT VTRVVSLAGS EIEVPYVSHV  420
RRSRPRENIM ALMECHSSCL EAKASAGDSN LLNREVVNRG SSMVNSACGP VQKEFATSHN  480
NNEEHILTEV DQDMEPDHGD SSGNSSDDYN NTGAPMMQGG GLRRKHHRAW TLSEVTKLVE  540
GVSKYGAGKW SEIKKLSFSS HSHRTSVDLK DKWRNLLRAS FAQSPSNSMG SFKKHGSMHI  600
PMEILLQVRE LAEKQSLVPP SHRTILRSPS LIKIPIFSFK SLGFFLFCFP FSAKFGPRHR  660
SNSVPRIIYH IISYHQAIVA ENSERKWESS KGLKKLKPRW LGRRRTKLQL KAKIAKLRTQ  720
LLEPPKGSSG GGDGFEVTKY GHGRVALIGF PSVGKSTLLT MLTGTHSEAA SYEFTTLTCI  780
PGVIRYNDTK IQLLDLPGII EGASEGKGRG RQVIAVAKSS DLVLMVLDAS KSEGHRQILT  840
KELEAVGLRL NKRPPQIYFK KKKTGGISFN TTAPLTRIDE KLCYQILHEY KIHNAEVLFR  900
EDATVDDFID VIEGNRKYIK CVYVYNKIDV VGIDDVDRLA RQPNSIVISC NLKASSIYIG  960
KTSSYYDSCF SRSARMESAK NPIHRSCSFV VNGLLPVLFE TIVNLNLDRL LARMWDEMGL  1020
VRVYSKPQGQ QPDFDEPFVL SADRGGCTVE DFCNHVHRTL VKDMKYALVW GTSARHYPQH  1080
CGLSHRLEDE DVVQIVKKKE REEGGRGRFK THSNAPARIA DREKKAPLKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a9a_A1e-112709109837376RIBOSOME-INTERACTING GTPASE 1
4a9a_B1e-112709109837376RIBOSOME-INTERACTING GTPASE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751258
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1189050.0AK118905.1 Arabidopsis thaliana At1g72660 mRNA for putative GTP-binding protein, complete cds, clone: RAFL21-25-A19.
GenBankBT0060310.0BT006031.1 Arabidopsis thaliana clone U51150 putative GTP-binding protein (At1g72660) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390637.10.0uncharacterized protein LOC18009454
TrEMBLA0A3P6H7970.0A0A3P6H797_BRAOL; Uncharacterized protein
STRINGXP_006390637.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6