PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751216
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 323aa    MW: 36453.2 Da    PI: 7.946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751216genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.33.7e-50181471128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                lppGfrFhP+d+elv++yL ++  g+k++       + +vd++k+ePwd+pk++  + k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++l+ k+
  676751216  18 LPPGFRFHPKDDELVCDYLMRRSLGHKINQPPpplLLIQVDLNKCEPWDIPKMACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAILR-KR 116
                79***********************99555333335899************8777799**************************************9.99 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                +lvg++ktLvfy+grap+g+ktdWvmhe+rl
  676751216 117 KLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 147
                9****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-618171IPR003441NAC domain
PROSITE profilePS5100555.96618170IPR003441NAC domain
PfamPF023653.4E-2619147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MESEEEKESS ISMVEAKLPP GFRFHPKDDE LVCDYLMRRS LGHKINQPPP PLLLIQVDLN  60
KCEPWDIPKM ACVGGKDWYF YSQRDRKYAT GLRTNRATAT GYWKATGKDR AILRKRKLVG  120
MRKTLVFYQG RAPRGRKTDW VMHEFRLQGS FDPPNHSPKE DWVLCRVFHK NTQGVLCRDN  180
TGSCFDETAS ASLPPLMDSY INFDQEPSSY LSDDHHFIIT EQVPCFSNLS QNQTLNTELT  240
NSVSQFKTPC KNLNPSFTGG SASATLPGLD SFYSSDQMVL RALLNQLTKI DGSNGIKKSQ  300
SYGEGSSESL LTDISIPGTA WNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-5011733171Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112117LRKRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751216
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9667490.0KC966749.1 Brassica napus NAC transcription factor 22 (NAC22.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175997.10.0NAC domain containing protein 1
SwissprotQ84TE60.0NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A178W7B20.0A0A178W7B2_ARATH; NAC1
STRINGAT1G56010.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.20.0NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]