PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676751214
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 712aa    MW: 77978.3 Da    PI: 7.0095
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676751214genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like971.4e-30187241155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr+rW+peLH++F+e+v++L G+ekAtPk++++lm+v+gLt+++vkSHLQkYRl
  676751214 187 KPRMRWSPELHDCFLEVVKKLNGPEKATPKAVMKLMNVEGLTIYQVKSHLQKYRL 241
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.959184244IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-28185242IPR009057Homeodomain-like
SuperFamilySSF466898.6E-17186241IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-24187242IPR006447Myb domain, plants
PfamPF002492.5E-9189240IPR001005SANT/Myb domain
PfamPF143793.0E-8312337IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
SuperFamilySSF519057.45E-16358566IPR023753FAD/NAD(P)-binding domain
PfamPF134503.3E-10358420No hitNo description
Gene3DG3DSA:3.50.50.602.3E-35359387IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.90.660.101.4E-48398465No hitNo description
Gene3DG3DSA:3.50.50.602.3E-35466556IPR023753FAD/NAD(P)-binding domain
Gene3DG3DSA:3.90.660.101.4E-48557664No hitNo description
Gene3DG3DSA:3.50.50.602.3E-35669708IPR023753FAD/NAD(P)-binding domain
SuperFamilySSF519057.45E-16672707IPR023753FAD/NAD(P)-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MNSHSIFSID GGNNACASSS LSPLHNFLNI QPTETIFQFR PSESRHVLNG SFSRSSAFCN  60
LSSSSSSETQ KHLGTTLPFL PNPSTERSPA ASFSSYDGGD SSFLTLSGDA FSDGGLGCPH  120
DNFSLSEQME LQFLSDELEL AITDRAETPR LDEIYQVTGS SSGQNCVPAA AMPVLSQPCP  180
GSAVDHKPRM RWSPELHDCF LEVVKKLNGP EKATPKAVMK LMNVEGLTIY QVKSHLQKYR  240
LAKYMPERMD GKANFTSYKI RIMVIQKTRN QLRIPVKQTS RTDNGGSPNA DGSTETIAST  300
ARGKTHHHIG EKVQRSLQLR IEEHAKYLEK ILDEQRKATS KQEPQLSSSS SAKDDDEFSG  360
AVCASTLARN GVAVTIFDSG RGPGGRMSQR REIGEDGKEL TFDHGAPFFS VTNSDAMALV  420
HEWESRGIVS EWKQVFGTFD CASNKFLPLQ QEVNANKYVG VPGMNSISKA LCHESGVQSM  480
FGIGIAKLEW LEEDIPWLLK DSKGENMGRF DGVVASDKNI VSPRFTQATG LPPPLDLNLV  540
PELATKLQHI PVLPCFSLML AFKEPLSLIP AKGLSFKNSE ILSWAHCDSS KPGRSTDSER  600
WILHSTPEYA NSVIAKTGLQ KLSSETLNKI SEEMFKEFQC SGLVCSLPFF MKAHRWGSAF  660
PAKSVAVEER CLWDRKRNLA ICGDFCVSPN VEGAILSGLA AASKLLQASS CL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kkj_A7e-3235870412322Amine oxidase, flavin-containing
3kkj_B7e-3235870412322Amine oxidase, flavin-containing
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676751214
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167800.0AK316780.1 Arabidopsis thaliana AT1G56000 mRNA, complete cds, clone: RAFL07-92-M01.
GenBankAY0698970.0AY069897.1 Arabidopsis thaliana T6H22.19/T6H22.19 mRNA, complete cds.
GenBankAY1420260.0AY142026.1 Arabidopsis thaliana At1g55980/T6H22.19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_175996.20.0FAD/NAD(P)-binding oxidoreductase family protein
TrEMBLQ8VYV20.0Q8VYV2_ARATH; AT1G56000 protein
STRINGAT1G56000.10.0(Arabidopsis thaliana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.23e-84G2-like family protein