PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676750324
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family G2-like
Protein Properties Length: 569aa    MW: 61901.5 Da    PI: 6.8694
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676750324genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.9e-32231286156
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  676750324 231 KARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 286
                68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.682228288IPR017930Myb domain
SuperFamilySSF466894.66E-17229289IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-28229289IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-26231286IPR006447Myb domain, plants
PfamPF002495.3E-7233284IPR001005SANT/Myb domain
PfamPF079835.1E-18428495IPR012946X8 domain
SMARTSM007688.9E-30428510IPR012946X8 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MASSSELSLD CKPQSYSMLL KSFGENFQSD QTTQKLEDLL SRLEQERLKI DAFKRELPLC  60
MQLLNNAVEV YKQQLEAYRA NSNNNQSVAA RPVLEEFIPL RNQPEKANNK GNNWMTTAQL  120
WSQPETKPKN IDPTTEQSPK DELASSPKLG HFDAKQRNGG GAFLPFTKEQ SLPELALSTE  180
VKRVSPANEH TNDHDGNDES MINGGNNNNS NNNNNSNSNG VSSTTSQSNR KARRCWSPDL  240
HRRFVQALQM LGGSQVATPK QIRELMKVDG LTNDEVKSHL QKYRLHTRRP SPSPQTSGGQ  300
GPHLVVLGGI WVPPEYTNAH GGTPTLYHHQ VHHHHGNATA QPPQHFCSSQ EFYTTPPPPQ  360
PLHHHQFQTF NGSSGGGAAS TDSAHHQLTE SAADEGKSSE TLWSKAALVN HHEIASWSLV  420
SLGLNQLFKD GVEEKDLQTS IDYACGVLGD CNPIHEKGPC YQPNNVKSHC DWAVNTYFQR  480
AGQVPGSCNF SGTATTSPNP PSTVVTGCIY PSSPGSAGTP TTMGPPGTPT FPGPPAFGPT  540
GSFLPSGNDA LSLFTSIALT LGFSVIAFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-15231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-15231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A8e-15231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-15231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-15231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-15231284154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-15231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-15231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-15231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-15231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-15231284255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-15231284255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676750324
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216620.0AK221662.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-70-E23.
GenBankAY0605590.0AY060559.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
GenBankAY1336300.0AY133630.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013692490.10.0myb family transcription factor EFM
SwissprotQ9ZQ850.0EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A1J3ICB90.0A0A1J3ICB9_NOCCA; Transcription factor PCL1
STRINGBra025115.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.10.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]