PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676750130
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family CPP
Protein Properties Length: 1906aa    MW: 213360 Da    PI: 7.882
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676750130genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.71.1e-13705743241
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                ++k+CnCk+skClk+YCeCfa+g++C+  C+C +C+N+ e
  676750130 705 KQKHCNCKNSKCLKLYCECFASGSYCNG-CNCLNCHNNLE 743
                79**************************.********976 PP
2TCR49.68.1e-16789827139
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                k++kgC+Ckks ClkkYCeC++a++ Cse+C+C+dCkN 
  676750130 789 KHSKGCHCKKSGCLKKYCECYQANVLCSENCRCQDCKNF 827
                589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530983.41E-21211329IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.104.1E-38214334IPR012337Ribonuclease H-like domain
SMARTSM004794.2E-24215369IPR013520Exonuclease, RNase T/DNA polymerase III
CDDcd061451.11E-64217327No hitNo description
PfamPF009297.8E-6218299IPR013520Exonuclease, RNase T/DNA polymerase III
Gene3DG3DSA:3.40.720.102.0E-6335414IPR017849Alkaline phosphatase-like, alpha/beta/alpha
Gene3DG3DSA:3.40.720.102.0E-6447483IPR017849Alkaline phosphatase-like, alpha/beta/alpha
SMARTSM011144.7E-16704744IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.626705829IPR005172CRC domain
PfamPF036382.2E-10706741IPR005172CRC domain
SMARTSM011141.5E-18789830IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.3E-12792827IPR005172CRC domain
Gene3DG3DSA:3.40.50.18201.9E-3612181370IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534741.33E-2812271471IPR029058Alpha/Beta hydrolase fold
PfamPF054484.8E-712281350IPR008391Acetyl xylan esterase
Gene3DG3DSA:3.40.50.18201.9E-3614031472IPR029058Alpha/Beta hydrolase fold
Gene3DG3DSA:3.40.50.18202.9E-3816241758IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF534744.71E-3016351888IPR029058Alpha/Beta hydrolase fold
PfamPF126975.4E-816421869IPR000073Alpha/beta hydrolase fold-1
Gene3DG3DSA:3.40.50.18202.9E-3817911888IPR029058Alpha/Beta hydrolase fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003676Molecular Functionnucleic acid binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 1906 aa     Download sequence    Send to blast
MSSSKRKRDA GTAVEEDSAD DSDKSSTRNT FFDIYGPEAK PELVFKSPET TLNLQDVQGL  60
VTWVLAEGYM PDWVFIKNKP LIPKVVLLYL PGLDAALYLS HSKALASFKS SCGNPTPLLA  120
LSCVVDEMKT IDTLLTCKGK KKKTVTNSVE PPPLVSKPEE ACNLVGQSFT ELTKDIPFPV  180
TYYTLSRKEM EQNGYNFETE FISTLPAPSG SCPNEILALD CEMCITKDGL ELTRVTLVDI  240
EGQVLLDKLV KPTNHITDYN TRYSGITAQM LEGVTTTIKD IQEEFVKLVF KETILVGHSL  300
ENDLVSLKIS HNLVIDTAVL YKHPRGPDFG SPPEMIRKKL LGVLNESGKT TSIVDNINIV  360
KRYASESSNS IPISSDDEAL SKAMKEVKKK GSQFVWTQFS ELNTHFQSRA DDPQKVNSRL  420
AEMISLLTCS DDSVAGKRRK SNVSLETKEI LKKMDERVHA LHTALPTNTM FIVCTGHGDT  480
SIVHRVRKML RDESEIGFSR EKVVKVLEEL QAQAEVALCF VDPKETKKKQ KEEEGRKKLL  540
QLKTAQSLSH LRLNFRAMEK PDHDLGSHRN HLVRQLDYSL PAAAAKKMDS SNETEKKKQQ  600
SHSVLDSKSS REDFPSQPQP SSSGVEEERR LAAKSLKQPP CSPVRSSQPS ATEVTSHDVT  660
PPQKPPLHRF GQRNQSGKSR VSKQEPLTPR GQMEVESKDG GTPSKQKHCN CKNSKCLKLY  720
CECFASGSYC NGCNCLNCHN NLENETARQE AITGTLERNP DAFKPKIAGS PHGMKDLQED  780
VRQLIILGKH SKGCHCKKSG CLKKYCECYQ ANVLCSENCR CQDCKNFDGS EERSALIHGS  840
QVSETYMQQA TNAAVNRAIA TSGYLNTPES RKRKSKEGSH SVASRGPSAI PHPVHNQAVN  900
HVIRNTSLFS IPNNKAVSGT CTYRSSLSNT IQPRHVKELC SLLVTKSLDV ANKFSGAKCE  960
TDKRRKIEKD PSFDSAQRDD NETNDSPDCV LDATRMDEKP LSPATRALMC DDEHVIISEK  1020
ETSAGVKTRQ EKEDADTSSE IYSEQERQIL SSFRDYLIQL STRGSINGTN IKTNTYPRRK  1080
EPQDEEQSHR DSSLGNLLSK EQVAEKRFAR ACRRHQKHRF KTEHGICFSA ITGMMETPTN  1140
KAVDFRSEFL RVLLSRRSAQ VPLVAECSKP VDDPVFQDGV PSTEAIESCP KENINNLKEI  1200
IKEENLHLHT EAAEQGRLPL LILSLKEKIE ERKPAIVFMH GTNTNKEWLR PWLEAYASRG  1260
YVAIGLDSRY HGERADSKTA YRDALISSWK NGKTMPFIFD TVWDLIKLAE YLTQRKDIDP  1320
QRIGITGISL GGMHAWFAAA VDTRYSVVAP LIGVQGFRWA IDNDAWQARV NSIKPLFEEA  1380
RIDMGKKEID KEVVEKVWNR IAPGLASQFD SPYSLPVIAP RALYILNGAK DPRCPLGGLV  1440
DPLKRAQKAY KETASPGNFK FVAEDGVEHE LTSFMIKESS DCRSVSHPSP EYMDTPTTNE  1500
VDELRLEFLR LLRFRPSAEV VVKTSLLSLL LLSNLIITGV VGTPTNEAVD FRSEFLRTLL  1560
SRRPAQVPLV AKCSKPVKNP MFQNDVPSTQ AIESCPKENI SNLKEMLKEE NLHLQTEAAE  1620
QGRLPLLILS LKEKTEERRP AIVFMHGTYT NKEWLRPWLE AYASRGYVAI GLDSRYHGER  1680
ADSKTAYRDV WDLIKLAEYL TQREDIDPLR IGITGISLGG MHAWFAAAVD TRYSVVAPLI  1740
GVQGFRWAIE NDAWQARVNS IKPLFEEARI DMGKSEIDKE VVEKVWNRIA PGLASHFDSP  1800
YSLPVIAPRA LYILNGAEDP RCPLGGLVVP VKRAQKAYKK TASPGNFKAF GVLVFGSREQ  1860
FVAEDGVGHE VTSFMIKESS DWFDKFLKQG NMTLIETEAH EHMQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A7e-3170683811132Protein lin-54 homolog
5fd3_B7e-3170683811132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1526537KKKQKEEEGRKK
2869874SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676750130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1363100.0AY136310.1 Arabidopsis thaliana putative protein (At5g25770) mRNA, complete cds.
GenBankBT0087450.0BT008745.1 Arabidopsis thaliana At5g25770 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM4DVG90.0M4DVG9_BRARP; Uncharacterized protein
STRINGBra020513.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25790.10.0Tesmin/TSO1-like CXC domain-containing protein