PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749926
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family GRAS
Protein Properties Length: 770aa    MW: 85699.8 Da    PI: 5.6996
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749926genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.43.6e-1153947641373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    s+ l+a++++  v+P+ k + + aN+
  676749926 394 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---ASDMLKAYQTYISVCPFKKAAIIFANH 490
                5789**************************************************************9999...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 I++ + +++++HiiDf+is+G+QWpaL++ L+ Rp+gpp+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpfe+n+ +a+++e++++e+L++k+
  676749926 491 SIMRLTTNANTIHIIDFGISYGFQWPALIHRLSFRPGGPPKLRITGIELPQRGfrPAEGVQETGHRLARYCQKYKVPFEYNA-IAQKWETIKVEDLKIKE 589
                ***************************************************99*****************************.7**************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gE ++Vn+ ++ ++llde+v ++s+rd+vLkl+++ +P+v++ +    ++n++ F++rf eal +ysalfd+ ++kl re+e r + E+e+ grei+nvv
  676749926 590 GEFVVVNSLFRFKNLLDETVMVNSPRDAVLKLIRKANPNVFIQAVLSGSYNAPFFVTRFREALFHYSALFDMCDSKLTREDEMRLMFEKEFYGREIMNVV 689
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                aceg+er+er et+++W++r+ +aGF+++pl++  +++ kl +++ ++  + ++++ ++l++gWk+r +++ S+W
  676749926 690 ACEGTERVERPETYKQWQARVIRAGFRQLPLEKVLMQNLKLKIENGYDSNFDIDQNGNWLLQGWKGRIVYASSVW 764
                ***********************************************888************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.703368745IPR005202Transcription factor GRAS
PfamPF035141.3E-112394764IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MGSYSGGGFN GSLDGFDFSS EFDDLPASNG FYLDEPFLNF ASLDHSAAPM ETYPQKKDSN  60
NSAAASGDLL SSPSDEADFS DSVLKYISQV LMEEDMEEKP CMFHDALALQ AAEKSLYEAL  120
GEKYPSSSST MDHQAYSEKL AHDSPDGSCS GGGFSDYAST TTTTSSDSHW SVDGFENNRP  180
SWLQTPIPSN FVFQSTSRSS SVTASGGSSA AFGSGYGDDL VSSMFNDSEL AMQFKRGVEE  240
ASKFLPKSSQ LFIDVENYVP RNSGFKGNGS EVLVKTEKKD DAEHHNSAPP PNRLTGKKSH  300
WRDEDEDLVE ERSNKQSAVY VEETELSEMF DKILLCGGSG RPVCIINQKF PTETAKVETT  360
QQTQAQSNGA KATRGKKSAA NSTSNDSKKE TADLRTLLVL CAQAVSVDDR RTANEMLRQI  420
REHSSPLGNG SERLAHYFAN SLEARLAGTG TQIYTALSSK KTSASDMLKA YQTYISVCPF  480
KKAAIIFANH SIMRLTTNAN TIHIIDFGIS YGFQWPALIH RLSFRPGGPP KLRITGIELP  540
QRGFRPAEGV QETGHRLARY CQKYKVPFEY NAIAQKWETI KVEDLKIKEG EFVVVNSLFR  600
FKNLLDETVM VNSPRDAVLK LIRKANPNVF IQAVLSGSYN APFFVTRFRE ALFHYSALFD  660
MCDSKLTRED EMRLMFEKEF YGREIMNVVA CEGTERVERP ETYKQWQARV IRAGFRQLPL  720
EKVLMQNLKL KIENGYDSNF DIDQNGNWLL QGWKGRIVYA SSVWVPSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5240176826382Protein SCARECROW
5b3h_A2e-5240176825381Protein SCARECROW
5b3h_D2e-5240176825381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749926
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529580.0AK352958.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006417795.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLE4MWR10.0E4MWR1_EUTHA; mRNA, clone: RTFL01-12-F16
STRINGXP_006417795.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]