PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676749926 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | GRAS | ||||||||
Protein Properties | Length: 770aa MW: 85699.8 Da PI: 5.6996 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 376.4 | 3.6e-115 | 394 | 764 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL+ cA+avs +d + a+++L +++e++sp g+ +Rla+yf++ L+arla++++++y al++++ts s+ l+a++++ v+P+ k + + aN+ 676749926 394 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---ASDMLKAYQTYISVCPFKKAAIIFANH 490 5789**************************************************************9999...9************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 I++ + +++++HiiDf+is+G+QWpaL++ L+ Rp+gpp+lRiTg++ p+ g +e ++etg+rLa+++++ +vpfe+n+ +a+++e++++e+L++k+ 676749926 491 SIMRLTTNANTIHIIDFGISYGFQWPALIHRLSFRPGGPPKLRITGIELPQRGfrPAEGVQETGHRLARYCQKYKVPFEYNA-IAQKWETIKVEDLKIKE 589 ***************************************************99*****************************.7**************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 gE ++Vn+ ++ ++llde+v ++s+rd+vLkl+++ +P+v++ + ++n++ F++rf eal +ysalfd+ ++kl re+e r + E+e+ grei+nvv 676749926 590 GEFVVVNSLFRFKNLLDETVMVNSPRDAVLKLIRKANPNVFIQAVLSGSYNAPFFVTRFREALFHYSALFDMCDSKLTREDEMRLMFEKEFYGREIMNVV 689 **************************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 aceg+er+er et+++W++r+ +aGF+++pl++ +++ kl +++ ++ + ++++ ++l++gWk+r +++ S+W 676749926 690 ACEGTERVERPETYKQWQARVIRAGFRQLPLEKVLMQNLKLKIENGYDSNFDIDQNGNWLLQGWKGRIVYASSVW 764 ***********************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.703 | 368 | 745 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-112 | 394 | 764 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol |
Sequence ? help Back to Top |
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Protein Sequence Length: 770 aa Download sequence Send to blast |
MGSYSGGGFN GSLDGFDFSS EFDDLPASNG FYLDEPFLNF ASLDHSAAPM ETYPQKKDSN 60 NSAAASGDLL SSPSDEADFS DSVLKYISQV LMEEDMEEKP CMFHDALALQ AAEKSLYEAL 120 GEKYPSSSST MDHQAYSEKL AHDSPDGSCS GGGFSDYAST TTTTSSDSHW SVDGFENNRP 180 SWLQTPIPSN FVFQSTSRSS SVTASGGSSA AFGSGYGDDL VSSMFNDSEL AMQFKRGVEE 240 ASKFLPKSSQ LFIDVENYVP RNSGFKGNGS EVLVKTEKKD DAEHHNSAPP PNRLTGKKSH 300 WRDEDEDLVE ERSNKQSAVY VEETELSEMF DKILLCGGSG RPVCIINQKF PTETAKVETT 360 QQTQAQSNGA KATRGKKSAA NSTSNDSKKE TADLRTLLVL CAQAVSVDDR RTANEMLRQI 420 REHSSPLGNG SERLAHYFAN SLEARLAGTG TQIYTALSSK KTSASDMLKA YQTYISVCPF 480 KKAAIIFANH SIMRLTTNAN TIHIIDFGIS YGFQWPALIH RLSFRPGGPP KLRITGIELP 540 QRGFRPAEGV QETGHRLARY CQKYKVPFEY NAIAQKWETI KVEDLKIKEG EFVVVNSLFR 600 FKNLLDETVM VNSPRDAVLK LIRKANPNVF IQAVLSGSYN APFFVTRFRE ALFHYSALFD 660 MCDSKLTRED EMRLMFEKEF YGREIMNVVA CEGTERVERP ETYKQWQARV IRAGFRQLPL 720 EKVLMQNLKL KIENGYDSNF DIDQNGNWLL QGWKGRIVYA SSVWVPSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-52 | 401 | 768 | 26 | 382 | Protein SCARECROW |
5b3h_A | 2e-52 | 401 | 768 | 25 | 381 | Protein SCARECROW |
5b3h_D | 2e-52 | 401 | 768 | 25 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676749926 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352958 | 0.0 | AK352958.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-F16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417795.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | E4MWR1 | 0.0 | E4MWR1_EUTHA; mRNA, clone: RTFL01-12-F16 | ||||
STRING | XP_006417795.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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