PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676749906

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Dof

Protein Properties

Length: 276aa MW: 29654.7 Da PI: 9.9601

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676749906	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	14	72	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e alkcprCds ntkfCyynny+l+qPr+fCk+CrryWt+GGalrnvPvGgg+r+n k+ 676749906 14 EGALKCPRCDSINTKFCYYNNYNLTQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNSKK 72 5689***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	1	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-32	16	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.534	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003002	Biological Process	regionalization
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0009625	Biological Process	response to insect
GO:0009753	Biological Process	response to jasmonic acid
GO:0010439	Biological Process	regulation of glucosinolate biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MAERARQAKA PPPEGALKCP RCDSINTKFC YYNNYNLTQP RHFCKSCRRY WTRGGALRNV 60 PVGGGCRRNS KKGKNGNSKS SSSSSKQSSS TANAPSSSSG QLRTNHQFPF LPTLHNLTQL 120 GGIGLNLAAT NGNNQAHQIG SSLMNDLGFL HVGNGRNTLA PITGNINDNN NNGENSLMAS 180 AGSLSQFALF DPTSGLYAFQ NEGNIGNNVG ISFSSTSMVD SRAYQAAPVK MEDQTNLVNL 240 SRPVSSLTSP GNQTTQYFWN NSDFSGPSSN DHHQLL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:16740150, ECO:0000269\|PubMed:23057675, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676749906

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:16740150}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006417783.1	1e-167	dof zinc finger protein DOF1.1 isoform X2
Refseq	XP_024009023.1	1e-166	dof zinc finger protein DOF1.1 isoform X1
Swissprot	Q8L9V6	1e-141	DOF11_ARATH; Dof zinc finger protein DOF1.1
TrEMBL	V4MVE9	1e-165	V4MVE9_EUTSA; Uncharacterized protein
STRING	XP_006417783.1	1e-166	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5336	17	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	1e-129	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]