PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749604
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 814aa    MW: 88920.4 Da    PI: 6.9523
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749604genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.7e-20119174156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++ Le++F+++ +p++++r +L+++l+L+ rqVk+WFqNrR+++k
  676749604 119 KKRYHRHTPKQIQDLESVFKECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMK 174
                688999***********************************************999 PP
2START178.15.3e-563295492206
                HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
      START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                la++a++elvk+a+ ++p+Wv+ss     e++n++e+ ++f++  +     + +ea++++g v+ ++  lve+l+d+  +W e+++    + +t+e iss
  676749604 329 LALAAMDELVKLAQRQDPLWVRSSdssgfEMLNKEEYDTSFSRCVGpkqdgFVSEASKETGTVIINSLALVETLMDSE-RWAEMFPsmisRTSTTEIISS 427
                6899*************************99999999999976444888889**************************.*******9999********** PP

                T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
      START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                g      gal+l  aelq+lsplvp R + f+R+++q+ +g+w++vdvS+ds ++ + sss+ R   lpSg+l+++++ng+skvtw+eh++++++ +h l
  676749604 428 GmggtrnGALHLLHAELQLLSPLVPvRQVSFLRFCKQHAEGVWAVVDVSIDSIKEAS-SSSCRR---LPSGCLVQDMANGYSKVTWIEHTEYDENRIHRL 523
                *******************************************************98.677666...********************************* PP

                HHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 181 lrslvksglaegaktwvatlqrqcek 206
                +r+l++ gla+ga++w+a+lqrqce+
  676749604 524 YRPLLSCGLAFGAQRWMAALQRQCEC 549
                ************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-19106176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.8E-21110176IPR009057Homeodomain-like
PROSITE profilePS5007117.265116176IPR001356Homeobox domain
SMARTSM003893.5E-18117180IPR001356Homeobox domain
PfamPF000461.8E-17119174IPR001356Homeobox domain
CDDcd000861.70E-17119176No hitNo description
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PROSITE profilePS5084840.359319552IPR002913START domain
SuperFamilySSF559615.08E-31322549No hitNo description
CDDcd088753.88E-106323548No hitNo description
SMARTSM002341.9E-41328549IPR002913START domain
PfamPF018524.5E-48329549IPR002913START domain
SuperFamilySSF559618.65E-18578806No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MNFNGFLGDG SSGDRTSKLI SDAPYSDHFS FSAAATMLGT AVSPPNHTLI PHSRPFSSHG  60
LSLGLQTNGE NGRNGETFES NGTRKSRGED AESRSESDNA EAVSGDDLET GDNKPPRKKK  120
RYHRHTPKQI QDLESVFKEC AHPDEKQRLD LSRRLNLDPR QVKFWFQNRR TQMKTQIERH  180
ENALLRQEND KLRAENMSVR EAMRNPMCGN CGGPAVLGEI SMEEQHLRIE NARLKDELDR  240
VCALTGKFLG RSIPSPNGSH HVPDSALVLG VGVGGCNGGG GFSLSSPPIP QGSPRFEISN  300
GTGSCLPTVN RQHPVSVSDF DQRSRYLDLA LAAMDELVKL AQRQDPLWVR SSDSSGFEML  360
NKEEYDTSFS RCVGPKQDGF VSEASKETGT VIINSLALVE TLMDSERWAE MFPSMISRTS  420
TTEIISSGMG GTRNGALHLL HAELQLLSPL VPVRQVSFLR FCKQHAEGVW AVVDVSIDSI  480
KEASSSSCRR LPSGCLVQDM ANGYSKVTWI EHTEYDENRI HRLYRPLLSC GLAFGAQRWM  540
AALQRQCECL TILMSSTVSP SRSPTPISCS GRKSMLKLAK RMTDNFCGGV CASSLQKWSK  600
LNVGNVDADV RIMTRKSVND PGEPPGIILN AATSVWMPVS PRRLFDFLGN ERLRSEWDIL  660
SNGGPMQEMA HIAKGHDHSN SVSLLRATAI NANQSSMLIL QETSIDTAGA VVVYAPVDIP  720
AMQAVMNGGD STYVALLPSG FAILPNAPQR CAAEERNGNG NCMEEGGSLL TVAFQILVNS  780
LPTAKLTVES VETVNNLISC TVQKIKAALH CDST
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00418DAPTransfer from AT3G61150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749604
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1824900.0DQ182490.1 Brassica napus baby boom interacting protein 2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402516.10.0homeobox-leucine zipper protein HDG1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLV4LJP30.0V4LJP3_EUTSA; Uncharacterized protein
STRINGXP_006402516.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]