PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749596
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26352.8 Da    PI: 9.1142
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749596genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF991.9e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtfskR+ g+lKKA+ELSvLCd+eva+i+fss+gklye+ss
  676749596  9 KRIENKINRQVTFSKRKSGLLKKAYELSVLCDVEVALIVFSSSGKLYEFSS 59
               79***********************************************96 PP
2K-box73.65.8e-2578153681
      K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 
                ++   e+ ++s++qe++kLk+++e+L r++R llGedL+++s+keLq Le+qLe +l+ iR++K++ l +  ++l+
  676749596  78 DNPRLEESTQSWCQEVTKLKSKYESLVRTHRYLLGEDLGEMSVKELQTLERQLEGALSAIRQRKERQLGDINKKLK 153
                455567779********************************************************99988777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.5E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.688161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-32273IPR002100Transcription factor, MADS-box
CDDcd002653.47E-41275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-31323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-2084152IPR002487Transcription factor, K-box
PROSITE profilePS5129711.55686186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGRVEMKR IENKINRQVT FSKRKSGLLK KAYELSVLCD VEVALIVFSS SGKLYEFSSV  60
AIDRTIERYY RCKSNISDNP RLEESTQSWC QEVTKLKSKY ESLVRTHRYL LGEDLGEMSV  120
KELQTLERQL EGALSAIRQR KERQLGDINK KLKLETEGQD FKGFQGLLLN SDARAGSTDF  180
SLQSSHHNSV DCNVGHFLQI GFQQQYEQGV ESLVLKSNVV RDRETNFTQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22169169MEF2 CHIMERA
6byy_B1e-22169169MEF2 CHIMERA
6byy_C1e-22169169MEF2 CHIMERA
6byy_D1e-22169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00417DAPTransfer from AT3G61120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749596
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009138791.11e-132PREDICTED: agamous-like MADS-box protein AGL13
SwissprotQ388371e-112AGL13_ARATH; Agamous-like MADS-box protein AGL13
TrEMBLM4DD861e-134M4DD86_BRARP; Uncharacterized protein
STRINGBra014454.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43022654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61120.11e-114AGAMOUS-like 13
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]