PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749478
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 333aa    MW: 37602.8 Da    PI: 7.4474
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749478genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00022426123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ykC+ C ksF +   L  H+r+H
  676749478  4 YKCKFCFKSFDNGRALGGHMRSH 26
               9*********************9 PP
2zf-C2H215.45.2e-05214236123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ Cgk+F++   L  H  +H
  676749478 214 YSCETCGKVFKSYQALGGHRASH 236
                99***********9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.51E-9326No hitNo description
Gene3DG3DSA:3.30.160.609.9E-4326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-5428IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118426IPR007087Zinc finger, C2H2
SMARTSM003550.016426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-4198238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.51E-9209236No hitNo description
PROSITE profilePS5015711.24214241IPR007087Zinc finger, C2H2
PfamPF139121.4E-10214238IPR007087Zinc finger, C2H2
SMARTSM003550.018214236IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058264286IPR007087Zinc finger, C2H2
PfamPF139125.8E-12264286IPR007087Zinc finger, C2H2
SMARTSM003550.23264286IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280266286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MESYKCKFCF KSFDNGRALG GHMRSHMPSL HKYSIGEEEV EEEEKPSQLS DNDTESDVSS  60
SSSEEGKING LRRDQEKHDD PKFASALVAD DGSETESSRN IINLTRKRSK RTRKLDSFST  120
KKTKTSQLGY NKNEPEPEPE PEPECEPPHS SASDTTTDED LAFCLIMLSR DKWKKKNKTS  180
SKQVVEEMET EEGYDKKSSK VIVIDRTTTT KGRYSCETCG KVFKSYQALG GHRASHKKNR  240
VSNKTELRSE TDKSNVVAGE KRIHECPICL RVFASGQALG GHKRSHGIGN LSVNHHHHSH  300
HHQVRLIESV KQRMIDLNLP APTEEDEVSV VFQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749478
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402568.11e-152zinc finger protein ZAT9
SwissprotQ9M2021e-135ZAT9_ARATH; Zinc finger protein ZAT9
TrEMBLV4NDF71e-151V4NDF7_EUTSA; Uncharacterized protein
STRINGXP_006402568.11e-151(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-106C2H2-like zinc finger protein