PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749282
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 298aa    MW: 34335.1 Da    PI: 6.6302
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749282genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32130188159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+v++s+fprsYYrCt++ C vkk+vers +dp+ v++tYeg+H+h+
  676749282 130 LDDGYKWRKYGQKPVRNSPFPRSYYRCTTTWCDVKKRVERSFSDPSSVITTYEGQHTHP 188
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-32117190IPR003657WRKY domain
SuperFamilySSF1182903.53E-28123190IPR003657WRKY domain
PROSITE profilePS5081131.031125190IPR003657WRKY domain
SMARTSM007746.6E-38130189IPR003657WRKY domain
PfamPF031064.1E-25131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MAFSDIGQMR VYSSFTHLSS ESYPVGFMDL LGAHHQDISR DALIHTPPMQ LPATPNPLSS  60
ISYAWCEAVT GEEKNRDYQE YEVEEEQQHK RNKRLKEIWD HRFKSTKSSE PMKTRVPKVS  120
FITKSQVNNL DDGYKWRKYG QKPVRNSPFP RSYYRCTTTW CDVKKRVERS FSDPSSVITT  180
YEGQHTHPRP LILSKQGSFG SSGSASGSHF DLIPTLPPQL DQLFDYNNHQ QLQQQELSPF  240
GIEYLNKEAN GFDRDNEDDD HVIKTSRTQD LNDDPAGLAK HHGLLQDVVQ AHIIKEEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-251231901077Probable WRKY transcription factor 4
2lex_A2e-251231901077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749282
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489373.11e-151PREDICTED: probable WRKY transcription factor 68
SwissprotQ93WV64e-94WRK68_ARATH; WRKY transcription factor 68
TrEMBLA0A078FDM01e-146A0A078FDM0_BRANA; BnaA09g39820D protein
STRINGBra007674.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150681619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62340.19e-88WRKY family protein