PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676749210

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 367aa MW: 42400.5 Da PI: 7.1673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676749210	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.6	4.6e-13	177	225	1	52
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +r +h ++Er+RR+++N+ ++ Lr+llP++ + ++ + a+i+ A++Y k 676749210 177 QRINHIAVERNRRRQMNEHINSLRSLLPPS---YIQRGDQASIVGGAINYAK 225 699*************************...9**************66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-16	175	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.00E-9	175	232	No hit	No description
PROSITE profile	PS50888	15.224	176	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-10	177	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-13	178	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.3E-9	182	233	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MERFQGHINP CFLDRKADAR SLEAQRFVLK EEEEEEEESL QDTVPFLQML QSEEDPSPFI 60 SFKEPNFRRL LSLQNLHKPW ELESYLSQED HHLFQSDTNG FYHNQILASS MRGTNKALSS 120 QELPFSRGDM TVPSSSSTPN SRRKRKSSDL VPPEMSREKR KRRKTKPSKN MEDIENQRIN 180 HIAVERNRRR QMNEHINSLR SLLPPSYIQR GDQASIVGGA INYAKVLEQI IQSLESQKRT 240 QQQSSLVENR VNSQETNNHH HHHHLSGISS THEDHQTCIP RIEATLIQNH VNLKVECTKK 300 QGQLLQGIIS LEKLRLTVLH LNISSSSHSA VSYSFNLKME DDCKLESADD ITKVARQIFD 360 IPDDLII

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MERFQGHINP CFLDRKADAR SLEAQRFVLK EEEEEEEESL QDTVPFLQML QSEEDPSPFI  60
SFKEPNFRRL LSLQNLHKPW ELESYLSQED HHLFQSDTNG FYHNQILASS MRGTNKALSS  120
QELPFSRGDM TVPSSSSTPN SRRKRKSSDL VPPEMSREKR KRRKTKPSKN MEDIENQRIN  180
HIAVERNRRR QMNEHINSLR SLLPPSYIQR GDQASIVGGA INYAKVLEQI IQSLESQKRT  240
QQQSSLVENR VNSQETNNHH HHHHLSGISS THEDHQTCIP RIEATLIQNH VNLKVECTKK  300
QGQLLQGIIS LEKLRLTVLH LNISSSSHSA VSYSFNLKME DDCKLESADD ITKVARQIFD  360
IPDDLII

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	163	KRKSSDLVPPEMSREKRKRRK
2	158	163	KRKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676749210

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488600	1e-108	AF488600.1 Arabidopsis thaliana clone bHLH067 putative bHLH transcription factor mRNA, partial sequence.
GenBank	AJ630481	1e-108	AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBank	AK118527	1e-108	AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBank	AY088741	1e-108	AY088741.1 Arabidopsis thaliana clone 93825 mRNA, complete sequence.
GenBank	BT005298	1e-108	BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006292401.1	1e-163	transcription factor bHLH67 isoform X2
Swissprot	Q700E4	1e-155	BH067_ARATH; Transcription factor bHLH67
TrEMBL	R0H7K9	1e-162	R0H7K9_9BRAS; Uncharacterized protein
STRING	XP_006292401.1	1e-163	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	1e-151	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development. J. Exp. Bot., 2015. 66(5): p. 1543-52 [PMID:25582452]