PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676749128
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 300aa    MW: 34015.8 Da    PI: 4.7804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676749128genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544e-17107157256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                +y+GVr ++ +g+++AeIrdps+   r r++lg+f taeeAa  +++a+  l+g+
  676749128 107 KYRGVRMRP-WGKFAAEIRDPSS---RSRIWLGTFVTAEEAAMVYDRAAIHLKGH 157
                8********.**********965...4***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-29106163IPR001471AP2/ERF domain
PfamPF008479.3E-10107157IPR001471AP2/ERF domain
PROSITE profilePS5103221.061107164IPR001471AP2/ERF domain
CDDcd000183.54E-28107163No hitNo description
SMARTSM003802.6E-35107170IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-20107164IPR016177DNA-binding domain
PRINTSPR003671.2E-9108119IPR001471AP2/ERF domain
PRINTSPR003671.2E-9130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MERRTRRVKF TEHRTVTPVP AKPSNGSPRV VRIAFTDPFA TDSSSDDDDD VTVTHPTPRV  60
KRYVEEIRFG ERDSSSSSSS SRKARSKAGE KSGGERRNDD VAKNPRKYRG VRMRPWGKFA  120
AEIRDPSSRS RIWLGTFVTA EEAAMVYDRA AIHLKGHNAQ TNFLTPPPPS PVIDLETVSA  180
CEDSRRSLRS PTSVLRFTEY RTELEKELIE LSPAVVEESR QSLFPDPYSL PDLCLAGDCF  240
WDAEIPPEPL FVDEDETGIH KPFPNMAIPK EENEPEDFSF GLMEDFDACP WDVDNFFEPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19106163462ATERF1
3gcc_A3e-19106163462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676749128
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006402462.21e-132ethylene-responsive transcription factor CRF6
SwissprotQ9M3741e-116CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A1J3CYF21e-145A0A1J3CYF2_NOCCA; Ethylene-responsive transcription factor CRF6
STRINGXP_006402462.11e-136(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-110cytokinin response factor 6