PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676748872
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family RAV
Protein Properties Length: 341aa    MW: 39630.8 Da    PI: 8.1868
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676748872genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.71.8e-155098155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               ++ykGV +++ +grW A+I++      +kr++lg+f +a+eAa a++ a  kl+g
  676748872 50 THYKGVVQHP-TGRWGAQIYVH-----HKRIWLGTFSSADEAAMAYDSASIKLRG 98
               68********.9*********4.....5************************998 PP

2B387.61e-27171265183
                EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                f+k+lt sdv+k++rlv+pkk+a ++            +g+  e+++++++d++ r+W+ +++y+++s+++v+t+GW+ Fvk++ Lke+D++vF+
  676748872 171 FQKKLTASDVGKLNRLVIPKKYAVKYlpfishddsereEGEIIEDIEVVFYDREMRQWKCRYCYWRSSQSFVFTSGWNAFVKEKSLKENDVLVFY 265
                99*****************************998777644444999************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-2350110No hitNo description
PfamPF008478.5E-105098IPR001471AP2/ERF domain
PROSITE profilePS5103218.47951108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-1851109IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-1651109IPR016177DNA-binding domain
SMARTSM003808.4E-2551114IPR001471AP2/ERF domain
PRINTSPR003672.8E-65263IPR001471AP2/ERF domain
PRINTSPR003672.8E-67288IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.4E-31165266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-27167266IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-23170265No hitNo description
SMARTSM010197.5E-17171282IPR003340B3 DNA binding domain
PROSITE profilePS5086312.337171284IPR003340B3 DNA binding domain
PfamPF023621.8E-24171266IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVSTVVLMSG TSGSSISVLP LKKRMIHFND RTNNATITTK AEKILSSANT HYKGVVQHPT  60
GRWGAQIYVH HKRIWLGTFS SADEAAMAYD SASIKLRGFD VNTYRNFPLS DFNKHEPEFQ  120
KRYTTETVLN MIKDGSYQRE YRDFLRDRSL VGSNWSRDEE SNKCFSRTQI FQKKLTASDV  180
GKLNRLVIPK KYAVKYLPFI SHDDSEREEG EIIEDIEVVF YDREMRQWKC RYCYWRSSQS  240
FVFTSGWNAF VKEKSLKEND VLVFYNCEAP LEGQRIKFLM IDVHCFSDND SVVTKEKLYE  300
TAYNSFEEVT KTENFLSSKL GEEEIKSNEN GGFMLFGVKI Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-22167267496B3 domain-containing transcription factor NGA1
5os9_B8e-22167267496B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676748872
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486600.11e-161PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
RefseqXP_018487331.11e-161PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-147RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A3P6FPW31e-155A0A3P6FPW3_BRAOL; Uncharacterized protein
STRINGBo6g022280.11e-152(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-138RAV family protein