PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676748870
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family RAV
Protein Properties Length: 332aa    MW: 38347.1 Da    PI: 7.3408
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676748870genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.6e-102773254
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
               +ykGV +   +g W A+I+       +kr++lg+f +  eAa+a++ a  kl+
  676748870 27 KYKGVVQQQ-NGHWGAQIYAD-----HKRIWLGTFRSDAEAAAAYDSASIKLR 73
               8****9888.8******9993.....4*********************99997 PP
2B389.33.1e-28158253184
                EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                f k ltpsdv+k++rlv+pkk+a +h            +++  e+++++++d+  r+W+++++y+k+s+++v+t+GW++Fvk+++Lke+D++vF+ 
  676748870 158 FRKGLTPSDVGKLNRLVIPKKYAVKHlpflsddqnereESEIGEDVEVVFYDSAMRQWKFRYCYWKSSQSFVFTRGWNGFVKEKNLKEKDVIVFYT 253
                7899***************************98776654444599*************************************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-152784IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-132785IPR016177DNA-binding domain
SMARTSM003802.8E-132790IPR001471AP2/ERF domain
PROSITE profilePS5103216.992784IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.108.3E-32153272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-28156254IPR015300DNA-binding pseudobarrel domain
CDDcd100172.78E-25157252No hitNo description
PfamPF023621.4E-25158253IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52158273IPR003340B3 DNA binding domain
SMARTSM010194.9E-18158262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTKPAPDNTI IVAAKTAQTV GFSNKAKYKG VVQQQNGHWG AQIYADHKRI WLGTFRSDAE  60
AAAAYDSASI KLRSFDANSH RNFPWTEFTI HEPTFQHEHT TEAVLNMIKD GSYQHKYREY  120
LRKHQSQILS RYNMVGSKEV GGKGNQEKNK WLSCTELFRK GLTPSDVGKL NRLVIPKKYA  180
VKHLPFLSDD QNEREESEIG EDVEVVFYDS AMRQWKFRYC YWKSSQSFVF TRGWNGFVKE  240
KNLKEKDVIV FYTCDVPTLE GQSRTNYLMI DVHCSLDDDS AVHDEEVNKT VCDVPEGEIK  300
TENFFNSKLE EETKKEENKR GFMLFGVTIQ SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-2515725113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676748870
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894269.21e-164AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6881e-161RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A397YYG91e-165A0A397YYG9_BRACM; Uncharacterized protein
STRINGfgenesh2_kg.1__4154__AT1G50680.11e-163(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-153RAV family protein