PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676748808 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | GRAS | ||||||||
Protein Properties | Length: 589aa MW: 66594.4 Da PI: 9.0484 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 523.5 | 7.1e-160 | 161 | 586 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lLl+cA++v+sg+l++a+a+L++ls+laspdgd+mqR+aayfteALa+r+++s+++lykal++++t+++n see+++++lf++++Pilk+s+l++N+ 676748808 161 LIHLLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQTRTNNISEEIHVRRLFFDMFPILKVSYLLTNR 260 689************************************************************************************************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 aI ea+ege++vH+iD+d+s+++QW+aL+qa++sRpegpp+lRiTgv++ +ke l ++++rL + Ae+l++pf+fn+ v+++l++l++e+Lrvk+gE 676748808 261 AIIEAMEGEKMVHVIDLDASEPAQWLALIQAFNSRPEGPPHLRITGVHH----QKEVLDQMAHRLIEEAEKLDIPFQFNP-VVTSLDCLNVEQLRVKTGE 355 *************************************************....9**************************.7999*************** PP GRAS 201 alaVnlvlqlhrll.......................................................desvsles..erdevLklvkslsPkvvvvve 243 alaV++vlqlh++l ++s++l++ ++d++L+++++lsPkv+vv+e 676748808 356 ALAVSSVLQLHNFLasdddflrkncalrfqnnpsgidlqrvltmshgsageapendisnnngyspsgdsASSLPLHNsgRIDRFLNAIWGLSPKVMVVTE 455 *******************************************************************99777777766799******************* PP GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 q++dhn+++++er+le+l++y+alfd+le+k+pr+s++rikvE++++g+ei+n++aceg+errerhe+lekW++r++ aGF++vpls++a+ qa++ll+ 676748808 456 QDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMFFGEEIKNIIACEGSERRERHEKLEKWSQRIDLAGFGNVPLSYYAMLQARRLLQG 555 **************************************************************************************************** PP GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++dgy+++eesg++v++W+drpL+svSaWr 676748808 556 YGFDGYMIKEESGCAVICWQDRPLYSVSAWR 586 ******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.707 | 135 | 566 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.5E-157 | 161 | 586 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 589 aa Download sequence Send to blast |
MTKVMILNPP HVKTKTHKSG GSNLEYRHIC CIGEKKKIRK VRFEKGKEKT KRKKTKPTIT 60 HCLILWTFRR IPNLGFGYSR YESPKVSIFS LKKGLSFTYR SSRFGTSMVA MFQEDNGTSS 120 VASSPLQVFS TMSLTRPTLL ASSSPFHCLK DLKPEERGLY LIHLLLTCAN HVASGSLQNA 180 NAALEQLSHL ASPDGDTMQR IAAYFTEALA NRILKSWPGL YKALNATQTR TNNISEEIHV 240 RRLFFDMFPI LKVSYLLTNR AIIEAMEGEK MVHVIDLDAS EPAQWLALIQ AFNSRPEGPP 300 HLRITGVHHQ KEVLDQMAHR LIEEAEKLDI PFQFNPVVTS LDCLNVEQLR VKTGEALAVS 360 SVLQLHNFLA SDDDFLRKNC ALRFQNNPSG IDLQRVLTMS HGSAGEAPEN DISNNNGYSP 420 SGDSASSLPL HNSGRIDRFL NAIWGLSPKV MVVTEQDSDH NGSTLMERLL ESLYTYAALF 480 DCLETKVPRT SQDRIKVEKM FFGEEIKNII ACEGSERRER HEKLEKWSQR IDLAGFGNVP 540 LSYYAMLQAR RLLQGYGFDG YMIKEESGCA VICWQDRPLY SVSAWRCRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-39 | 161 | 586 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 53 | KKKIRKVRFEKGKEKTKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676748808 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC012561 | 0.0 | AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence. | |||
GenBank | AY056154 | 0.0 | AY056154.1 Arabidopsis thaliana putative scarecrow 3 protein (At1g50420) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006393154.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | V4JY52 | 0.0 | V4JY52_EUTSA; Uncharacterized protein | ||||
STRING | XP_006393154.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4098 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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