PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676748562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ERF | ||||||||
Protein Properties | Length: 347aa MW: 39763.2 Da PI: 6.7376 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.8e-19 | 200 | 250 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++ + kl+ge 676748562 200 LYRGVRQRH-WGKWVAEIRKPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 250 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.34E-34 | 199 | 259 | No hit | No description |
SMART | SM00380 | 2.8E-41 | 200 | 263 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.235 | 200 | 257 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-23 | 200 | 258 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 200 | 258 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-14 | 201 | 250 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 201 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-11 | 223 | 239 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:2000070 | Biological Process | regulation of response to water deprivation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MNTAAKNKGK SIKGLGASEA EKMDSQMESE EELQFKSKDS SGSGSEMWKP FFGEVSSTSQ 60 RSLRKTRTLD RHNPYLLSSS YANTTPDQPQ PTTSPAASSR VVFPFSLAPS IQNQQQFLYP 120 NDNPARQTQM ISFGPQLQMP PFSNAQQQQQ QHLLQYWRDI LNLSPSGRIM MMNMLRQEGD 180 LPLPMQLARP PIQPFSATKL YRGVRQRHWG KWVAEIRKPR NRTRLWLGTF DTAEEAAMAY 240 DREAFKLRGE TARLNFPELF LNKQESTPVH HQKQYETPAA SEEASERRDD DSSVAVGRVS 300 DETGWAEAWF NALPEEWGPG SPLWDDYHFP ISYNHNEKEE HEPPRQN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 199 | 265 | 4 | 70 | ATERF1 |
3gcc_A | 4e-20 | 199 | 265 | 4 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676748562 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884229.1 | 1e-173 | ethylene-responsive transcription factor ERF053 | ||||
Swissprot | Q9SKT1 | 1e-149 | ERF53_ARATH; Ethylene-responsive transcription factor ERF053 | ||||
TrEMBL | D7L5C0 | 1e-171 | D7L5C0_ARALL; Uncharacterized protein | ||||
STRING | scaffold_304438.1 | 1e-172 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2141 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 1e-151 | ERF family protein |
Publications ? help Back to Top | |||
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