PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676748454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | G2-like | ||||||||
Protein Properties | Length: 417aa MW: 45767.2 Da PI: 6.6487 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.7 | 2.6e-28 | 163 | 217 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G ekA+P++ilelm+v++Lt+++v+SHLQkYR++ 676748454 163 KVKVDWTPELHRRFVDAVEQL-GVEKAVPSRILELMGVHCLTRHNVASHLQKYRSH 217 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.947 | 160 | 219 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-27 | 161 | 220 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.7E-18 | 162 | 220 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-26 | 163 | 217 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 166 | 215 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MLALSPARNS TRDDCCDGES EFLATSCGFT IDPEDNFPEF ADHGDLLDII DFDDLFGVAG 60 DVLPDLEMDP EIFAGEYSDH MNASSTITTT TSSEKTTDSQ GETNNKGISG KGEEVVSKRD 120 HNETPAVAET VVNYDGDSDR KRKSSSSGSS KNNRITNNEG KRKVKVDWTP ELHRRFVDAV 180 EQLGVEKAVP SRILELMGVH CLTRHNVASH LQKYRSHRKH LLAREAEAAN WTRKRHIYGL 240 DSTGANINGR NKNGWLAPAP TIGFPPPPSV AVAPPPGHHH HFRPLHVWGH PTVDQSVMPH 300 VWPKHLPPPS TAMATPPFWI SDSPYWPRRF RAPPVAGIPQ ALPPHHTVYK PDHGFGGSRS 360 LMDLHPSKES VDAAIGDVLT RPWLPLPLGL KPPAVDGVMT ELHRHGVSEV PPTASCA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 3e-16 | 168 | 219 | 6 | 57 | Transcription factor LUX |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00022 | PBM | Transfer from AT2G20570 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676748454 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013675959.1 | 0.0 | transcription activator GLK1-like isoform X2 | ||||
Swissprot | Q9SIV3 | 0.0 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A1J3DUV9 | 0.0 | A0A1J3DUV9_NOCCA; Transcription activator GLK1 | ||||
STRING | Bo7g003410.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2209 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 0.0 | GBF's pro-rich region-interacting factor 1 |