PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676747692
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 512aa    MW: 56639.4 Da    PI: 8.5614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676747692genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-056989323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C+ Cgk F r  nL+ H r H
  676747692 69 CEVCGKGFQRDQNLQLHRRGH 89
               *******************88 PP
2zf-C2H213.30.00024143165123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k++  +s+ k H +t+
  676747692 143 WKCEKCSKRYAVQSDWKAHSKTC 165
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.5E-56590No hitNo description
Gene3DG3DSA:3.30.160.602.8E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0896789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.516789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355130143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MTAEDQTISG SGGYVRSSST TDHVDHHEHE SLNPPLAKKK RNLPGNPDPE AEVIALSPKT  60
LMATNRFLCE VCGKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEVRKRVYVC PEKTCVHHHP  120
TRALGDLTGI KKHFCRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY RCDCGTIFSR  180
RDSFITHRAF CDALAEETAR LNAASHLKSL TSNNLNYHYL MGTLIPSPPP PPSFPFGAQQ  240
PQPQPPQHQH HHHFPITTTN FDHHHQHQDA MKPASSLSLW MGGNINHHQV TINDRSIAMH  300
PQPQSPHDDY NWVFGNANNR GELITTSDPL MTQEHINIVV PSKENANAAT SLSVPSLFSS  360
VDHMTQDANA AVSAVANMSA TALLQKAAQM GANSSTPTTT TSITTDQSAF LQSFASKISG  420
QSQIVEDGGS DKFFALFGSN SVGLMGNNGL HHELDNPRNG ITVVSGIDEL QNYPWKRRRV  480
ESGDVGAGGQ TRDFLGVGVQ TMCHSSSING WI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-36139214372Zinc finger protein JACKDAW
5b3h_F6e-36139214372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475479KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676747692
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475014.10.0PREDICTED: zinc finger protein MAGPIE-like isoform X1
SwissprotQ9ZWA60.0IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLR0GWJ50.0R0GWJ5_9BRAS; Uncharacterized protein
STRINGXP_010475014.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37102660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.10.0C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]