PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676747546 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NAC | ||||||||
Protein Properties | Length: 280aa MW: 32023.1 Da PI: 4.8946 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 127.5 | 1.1e-39 | 5 | 142 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 +Gf F+Ptdeelv +yL++k+ g ++ ++++i+ev+i +++Pw+L+ +kvk+++ wyfFs+rd+kya+g+r+nr t+sg+Wk tg e+++++g+ 676747546 5 VGFGFRPTDEELVGYYLHNKILGYNCLVQDTINEVNISDFDPWNLRfqSKVKSKDLVWYFFSRRDNKYANGDRQNRRTSSGFWKITGPPVEIIDQRGSWc 104 7************************99999***************85347777888**************************************844435 PP NAM 100 .....vglkktLvfykgrapkge....ktdWvmheyrl 128 +g k++Lvf +gr+++++ k+dWvmhey+ 676747546 105 glagkIGYKRVLVFRRGRSSSSQsqstKSDWVMHEYHY 142 55555**********775544333333*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.543 | 3 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-23 | 5 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.66E-43 | 5 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MEDIVGFGFR PTDEELVGYY LHNKILGYNC LVQDTINEVN ISDFDPWNLR FQSKVKSKDL 60 VWYFFSRRDN KYANGDRQNR RTSSGFWKIT GPPVEIIDQR GSWCGLAGKI GYKRVLVFRR 120 GRSSSSQSQS TKSDWVMHEY HYTLLPEDQR TYVICRLEYK GDDINILSAN QTDPVPTSVP 180 NATDSTAVDS VVSQTVQGNS GSFNTFSAYD SVNQGQRFSG DFNQEQPVVP YDAYDDSQRI 240 WDYVVEENFS HYRPKRPVTG FFVDDSSNAD TDTESTGARC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-26 | 6 | 157 | 23 | 165 | NAC domain-containing protein 19 |
3swm_B | 8e-26 | 6 | 157 | 23 | 165 | NAC domain-containing protein 19 |
3swm_C | 8e-26 | 6 | 157 | 23 | 165 | NAC domain-containing protein 19 |
3swm_D | 8e-26 | 6 | 157 | 23 | 165 | NAC domain-containing protein 19 |
3swp_A | 8e-26 | 6 | 157 | 23 | 165 | NAC domain-containing protein 19 |
3swp_B | 8e-26 | 6 | 157 | 23 | 165 | NAC domain-containing protein 19 |
3swp_C | 8e-26 | 6 | 157 | 23 | 165 | NAC domain-containing protein 19 |
3swp_D | 8e-26 | 6 | 157 | 23 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676747546 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022559044.1 | 1e-148 | NAC domain-containing protein 1-like | ||||
Swissprot | Q0WV96 | 2e-93 | NAC1_ARATH; NAC domain-containing protein 1 | ||||
TrEMBL | A0A0D3C716 | 1e-143 | A0A0D3C716_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g002850.1 | 1e-144 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7658 | 16 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01010.1 | 2e-95 | NAC domain containing protein 1 |
Publications ? help Back to Top | |||
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