PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676746608 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 846aa MW: 92630.2 Da PI: 6.3815 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.4e-18 | 19 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ 676746608 19 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 5678*****************************************************97 PP | |||||||
2 | START | 191.1 | 5.4e-60 | 168 | 376 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 +aeea++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++tl vi g g+++l++++++ 676746608 168 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPM-KVAEILKDRPSWLRDCRCVDTLSVIPAGngGTIELIYTQMY 266 799*******************************************************.8888888888*****************999*********** PP TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195 a+++l++ Rdf+++Ry+ +l++g++v++++S++s + p+ sss+vRae++pSg+li+p+++g+s +++v+hvdl+++++++++r+l++s+ + ++k+ 676746608 267 APTTLAAaRDFWTLRYSTCLEDGSYVVCERSLTSATGGPTgppSSSFVRAEMRPSGFLIRPCEGGGSILHIVDHVDLDAWSVPEVMRPLYESSKILAQKM 366 ************************************9999999********************************************************* PP HHHHTXXXXX CS START 196 wvatlqrqce 205 +va+l++ ++ 676746608 367 TVAALRHVRQ 376 *****98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.321 | 14 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-15 | 16 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 18 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.06E-16 | 19 | 79 | No hit | No description |
Pfam | PF00046 | 6.4E-16 | 20 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 21 | 77 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 5.44E-6 | 71 | 110 | No hit | No description |
PROSITE profile | PS50848 | 26.98 | 158 | 386 | IPR002913 | START domain |
CDD | cd08875 | 6.87E-76 | 162 | 378 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.2E-22 | 166 | 372 | IPR023393 | START-like domain |
SMART | SM00234 | 1.1E-63 | 167 | 377 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.57E-36 | 167 | 379 | No hit | No description |
Pfam | PF01852 | 2.9E-57 | 168 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.65E-5 | 415 | 496 | No hit | No description |
SuperFamily | SSF55961 | 1.65E-5 | 528 | 603 | No hit | No description |
Pfam | PF08670 | 1.1E-49 | 700 | 845 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MMVHTMHRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE AARLQTVNRK LNAMNKLLME ENDRLQKQVS HLVYENGHMK 120 QQLHTGSGTT TDNSCESVVV SGQQHQQQNP NPQHLQRDAN NPAGLLSIAE EALAEFLSKA 180 TGTAVDWVQM IGMKPGPDSI GIVAISRNCS GIAARACGLV SLEPMKVAEI LKDRPSWLRD 240 CRCVDTLSVI PAGNGGTIEL IYTQMYAPTT LAAARDFWTL RYSTCLEDGS YVVCERSLTS 300 ATGGPTGPPS SSFVRAEMRP SGFLIRPCEG GGSILHIVDH VDLDAWSVPE VMRPLYESSK 360 ILAQKMTVAA LRHVRQIAQE TSGEVQYGGG RQPAVLRTFS QRLCRGFNDA VNGFVDDGWS 420 PLGSDGAEDI TVMINLSPGK FGGSQYGNSF LPSFGSGVLC AKASMLLQNV PPAVLVRFLR 480 EHRSEWADYG VDAYAAASLR ASPFAVPCAR AGGFPSNQVI LPLAQTVEHE EFLEVVRLEG 540 HAYSPEDMGL ARDMYLLQLC SGVDENVVGG CAQLVFAPID ESFADDAPLL PSGFRVIPLE 600 HKSTPNGASA NRTLDLASAL EGSTRQAGEA DPNGCNFRSV LTIAFQFTFD NHTRDNVASM 660 ARQYVRSIVG SIQRVALAIA PRPGSTISPI SAPTSPEALT LVRWISRSYR VHTGADLFGS 720 DSQTSGDTLL RQLWNHTDAI LCCSLKTNAS PVFTFANQTG LDMLETTLVA LQDIMLDKTL 780 DESGRKALCS EFPKIMQQGY AHLPAGVCAS SMGRLVSYEQ ATVWKVLEDD ESNHCLAFMF 840 VNWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676746608 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441291 | 0.0 | AJ441291.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene). | |||
GenBank | AY099791 | 0.0 | AY099791.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds. | |||
GenBank | BT000335 | 0.0 | BT000335.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504942.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14 | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | V4M729 | 0.0 | V4M729_EUTSA; Uncharacterized protein | ||||
STRING | XP_010504942.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4256 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |