PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676745250
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 299aa    MW: 34154.3 Da    PI: 6.8505
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676745250genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.71.5e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd  l+ ++++ G+g +W + +r++g +R++k+c++rw++yl
        676745250 14 KGPWSPEEDAMLKSYIEKNGTGnNWISLPRRIGIKRCGKSCRLRWLNYL 62
                     79*******************************55************97 PP
2Myb_DNA-binding36.79.9e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
        676745250  69 GGFTDEEDYIICSLYITIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.183962IPR017930Myb domain
SMARTSM007173.5E-121364IPR001005SANT/Myb domain
SuperFamilySSF466895.43E-2613109IPR009057Homeodomain-like
PfamPF002491.4E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-231569IPR009057Homeodomain-like
CDDcd001671.06E-81662No hitNo description
PROSITE profilePS5129419.88763117IPR017930Myb domain
SMARTSM007171.2E-1067115IPR001005SANT/Myb domain
PfamPF002494.3E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-2370117IPR009057Homeodomain-like
CDDcd001674.69E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRAPCCDKT VVKKGPWSPE EDAMLKSYIE KNGTGNNWIS LPRRIGIKRC GKSCRLRWLN  60
YLRPNLKHGG FTDEEDYIIC SLYITIGSRW SIIASQLPGR TDNDIKNYWN TRLKKKLLSK  120
HGKAFHQQLN LRFEPETTSR RSSGQSQIPM YHDENTKPLL NQTYNQLANL PITSFAMEEP  180
IMVKDPILES SWEQNKGWFD IDHDAASSSY HHHASPSLNS MSSSSSSIGT NSSLQMTHNT  240
MNNNDHVSQE MFFMAGFENL QAELFDEIIN NNTTEIGFRG TDTLNGDYLD INSFIDYPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676745250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589662.11e-176PREDICTED: transcription factor RAX3
RefseqXP_013722975.11e-176transcription factor MYB87
SwissprotF4JSU01e-153MYB87_ARATH; Transcription factor MYB87
TrEMBLA0A0D3A1651e-175A0A0D3A165_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FL801e-175A0A3P6FL80_BRAOL; Uncharacterized protein
STRINGBo1g003420.11e-176(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-137myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]