PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676744590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 24692.3 Da PI: 6.2526 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.9 | 2e-07 | 5 | 47 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT Ed+ + +a +++ g +W++Ia ++ +++ ++++++ 676744590 5 QWTRSEDKMFEQALVLFPEGspnRWERIADQLQ--KSAGEVREHY 47 7*******************************9..8********9 PP | |||||||
2 | Myb_DNA-binding | 41.5 | 3.2e-13 | 99 | 143 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky 676744590 99 PWSENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 143 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.076 | 1 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 5.0E-8 | 2 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.81E-12 | 4 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.7E-6 | 5 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.11E-6 | 6 | 51 | No hit | No description |
PROSITE profile | PS51294 | 18.244 | 92 | 148 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.58E-15 | 94 | 148 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-16 | 95 | 147 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.5E-8 | 96 | 146 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-10 | 98 | 142 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-11 | 99 | 143 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.20E-7 | 99 | 144 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MASSQWTRSE DKMFEQALVL FPEGSPNRWE RIADQLQKSA GEVREHYEAL VHDVIEIDSG 60 RVDVPDYMDD SSAAAGWDSA GQISFGSKHG ENERKRGTPW SENEHKLFLI GLKRYGKGDW 120 RSISRNVVVT RTPTQVASHA QKYFLRQNSG KKERKRSSIH DITTVDANLA LPGSNMDWNG 180 QQDSPPVQPQ QQQPPQIMSE FGQQLTPGGQ FEDFGFRM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676744590 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493736 | 1e-162 | AB493736.1 Arabidopsis thaliana At5g04760 mRNA for hypothetical protein, partial cds, clone: RAAt5g04760. | |||
GenBank | AY050976 | 1e-162 | AY050976.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds. | |||
GenBank | AY091177 | 1e-162 | AY091177.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423540.1 | 1e-140 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 7e-58 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A397ZYQ0 | 1e-138 | A0A397ZYQ0_BRACM; Uncharacterized protein | ||||
STRING | Bostr.13129s0486.1.p | 1e-141 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5127 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-124 | MYB family protein |
Publications ? help Back to Top | |||
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