PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676744300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NF-YC | ||||||||
Protein Properties | Length: 287aa MW: 32144.9 Da PI: 4.7572 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 57.6 | 2.8e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +tl ++++v+r ++fdfl ++v + 676744300 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTLSSLHLKNCVERYNVFDFLREVVSK 86 5789************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.4E-25 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.65E-19 | 4 | 88 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.6E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK 60 TLSSLHLKNC VERYNVFDFL REVVSKVPDY GQADVTMDDR SISKRRKPTG DEANDSDEEL 120 KKTKVQEMGQ AGPSGRGRGR GRGRGRGRSA KTAERELLQR EMEIEPTISL APPLTQDGIT 180 MSAPPQLPPR DMDKNDVDDT SNHPKQELQS PRVGNDTNSG FGRDFDLNTQ SLDIEIKPPV 240 VTASRETKPE EYPGWSRTDI GNIDPMQLAS MGTRLDEDDE DYDEEEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 8e-23 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 146 | RGRGRGRGRG |
2 | 137 | 147 | RGRGRGRGRGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676744300 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006399184.1 | 1e-156 | dr1-associated corepressor isoform X1 | ||||
TrEMBL | V4LE09 | 1e-154 | V4LE09_EUTSA; Uncharacterized protein | ||||
STRING | XP_006399184.1 | 1e-155 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3506 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 1e-103 | nuclear factor Y, subunit C11 |