PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676744298 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C3H | ||||||||
Protein Properties | Length: 324aa MW: 36129.5 Da PI: 6.8282 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.7 | 1.8e-07 | 98 | 117 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ G C++Gd+C FaHg 676744298 98 CPAFRN-GACHRGDTCEFAHG 117 666666.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.9E-4 | 92 | 118 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.267 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-6 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-5 | 98 | 120 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 22 | 127 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MLKSVNPMAF YELGEQQFPT LGYMVSKPGN AGAYEIDPPI PSVDDAIYGS DEFRMYAYKI 60 KRCPRTRSHD WTECPYAHRG EKATRRDPRR YSYCAVACPA FRNGACHRGD TCEFAHGVFE 120 YWLHPARYRT RACNAGNLCQ RKVCFFAHAP EQLRQSEGKH RCRYAYRPVR TTAGRGRNGD 180 GVGMRLDGDD FDTWQSPVKS GKSDLDINEE RVFKCWSGIS IVDDHYEPST YVPHPGGVFP 240 LADAAPPADH PDPPAGLLPP AGAAPPPDLF PNVPENVFPP QDPPYPPENF SIFNGVLADR 300 ANEVPAAVLS YTEDGKEKAT IKLT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Embryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676744298 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY350711 | 0.0 | AY350711.1 Sisymbrium irio clone BAC Sio11E11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018444955.1 | 1e-161 | PREDICTED: zinc finger CCCH domain-containing protein 54 | ||||
Swissprot | O65036 | 1e-145 | C3H54_ARATH; Zinc finger CCCH domain-containing protein 54 | ||||
TrEMBL | Q6V5J0 | 1e-169 | Q6V5J0_SISIR; Zn-finger transcription factor | ||||
STRING | XP_006399233.1 | 1e-160 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11527 | 21 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 1e-147 | C3H family protein |