PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676744138 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | WRKY | ||||||||
Protein Properties | Length: 323aa MW: 36362.4 Da PI: 9.5113 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.9e-31 | 134 | 191 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsY+rCt+++C +kkkve+s ++++ei+Y+g+Hnh 676744138 134 EDGYNWRKYGQKQVKGSENPRSYFRCTYPNCLTKKKVETSLVKGHITEIVYRGSHNHA 191 7********************************************************7 PP | |||||||
2 | WRKY | 102.8 | 1.9e-32 | 254 | 312 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+ +d k v++tYeg+Hnh+ 676744138 254 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFTGCCVRKQVERAYQDAKSVITTYEGKHNHH 312 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-26 | 127 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.997 | 128 | 193 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-24 | 130 | 193 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-33 | 133 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-23 | 134 | 190 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.4E-36 | 239 | 314 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-28 | 246 | 314 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.15 | 249 | 314 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-36 | 254 | 313 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 255 | 312 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGSFNQQRSV PKFKSAIPSP LPLSSSSHYF SMPPGLTHAD LLDSPLLFTS SNILPSPTTG 60 TFPAQSLNWK NNRLLTDQDE IQPEDVVEKF DFSFTSNRTS PPLFLPSTVA QPLPQLDVPN 120 SESRSSHTGN QTSEDGYNWR KYGQKQVKGS ENPRSYFRCT YPNCLTKKKV ETSLVKGHIT 180 EIVYRGSHNH AKPLSTKRSA PTAETNNGKS HQSSSHGDDQ EIGDDEAGAK RWKREETVKE 240 PRVVVQTASD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TFTGCCVRKQ VERAYQDAKS 300 VITTYEGKHN HHVPTQRRCH TST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-33 | 134 | 314 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 4e-33 | 134 | 314 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00494 | DAP | Transfer from AT5G07100 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676744138 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002871249.1 | 1e-173 | probable WRKY transcription factor 26 isoform X1 | ||||
Swissprot | Q9C5T3 | 1e-163 | WRK26_ARATH; Probable WRKY transcription factor 26 | ||||
TrEMBL | D7LZX6 | 1e-172 | D7LZX6_ARALL; WRKY DNA-binding protein 26 | ||||
STRING | fgenesh1_pm.C_scaffold_6000545 | 1e-173 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15291 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07100.1 | 1e-158 | WRKY DNA-binding protein 26 |
Publications ? help Back to Top | |||
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