PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743592
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Dof
Protein Properties Length: 295aa    MW: 33161.2 Da    PI: 7.9698
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743592genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.89.7e-3859118261
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                +++ ++cprC+s+ntkfCyynnysl+qPry+Ck+CrryWt+GG+lrnvPvGgg+rknkk 
  676743592  59 PQEPRNCPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKKL 118
                67899****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2658111IPR003851Zinc finger, Dof-type
PfamPF027018.3E-3361117IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.44463117IPR003851Zinc finger, Dof-type
PROSITE patternPS01361065101IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDHHHYSHHD HDQYQHHMTT ITNNNPYNTI IATSPPRETA TTLDDDKKLM TTMTMTTRPQ  60
EPRNCPRCNS SNTKFCYYNN YSLAQPRYLC KSCRRYWTEG GSLRNVPVGG GSRKNKKLPS  120
LLPNSSSSSS SPASTKNLPD LNPPFIITSS STSSNPSRST HQNNNDLSLS SSSTMQDKRA  180
QGHYGHFTEQ SMTGGQNCLF SAPMGMIQFR QDYDHDHNKT DLGFSLDRNK EEISSHNNFV  240
VNGGGSKLMF PYGDRDEHHH HHERHDDGNK KRESGSSNEL WSGIILGGDS GGPTW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018463356.11e-147PREDICTED: dof zinc finger protein DOF4.1
RefseqXP_018463357.11e-147PREDICTED: dof zinc finger protein DOF4.1
RefseqXP_018463358.11e-147PREDICTED: dof zinc finger protein DOF4.1
SwissprotQ9M1611e-141DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBLA0A1J3J2I71e-156A0A1J3J2I7_NOCCA; Dof zinc finger protein DOF4.1
STRINGfgenesh1_pm.C_scaffold_60029011e-143(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146951720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.11e-104Dof family protein