PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743408
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 159aa    MW: 18767.6 Da    PI: 10.9771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743408genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-0831572148
                     TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++ W+ I++ ++ gR +kqc++rw+++l
        676743408 31 KPKWSIISKQLP-GRIGKQCRERWHNHL 57
                     568*********.*************97 PP
2Myb_DNA-binding52.79.9e-1763105145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT eE+++lv+a +  G++ W+ Ia+ ++ gRt++++k++w+
        676743408  63 KTPWTREEELILVQAQRHQGNK-WAEIAKLLP-GRTENNIKNHWN 105
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-6228IPR009057Homeodomain-like
SuperFamilySSF466892.14E-8245IPR009057Homeodomain-like
PROSITE profilePS5129410.4471657IPR017930Myb domain
SMARTSM007170.462059IPR001005SANT/Myb domain
CDDcd001672.39E-42757No hitNo description
Gene3DG3DSA:1.10.10.605.0E-183269IPR009057Homeodomain-like
PfamPF002491.0E-63357IPR001005SANT/Myb domain
SuperFamilySSF466893.42E-2936115IPR009057Homeodomain-like
PROSITE profilePS5129425.08758112IPR017930Myb domain
SMARTSM007174.2E-1562110IPR001005SANT/Myb domain
PfamPF002491.0E-1463105IPR001005SANT/Myb domain
CDDcd001671.20E-965105No hitNo description
Gene3DG3DSA:1.10.10.602.8E-1770112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKNDVQCQHR WLKVLNPNLN KGHWRKELND KPKWSIISKQ LPGRIGKQCR ERWHNHLNPT  60
IKKTPWTREE ELILVQAQRH QGNKWAEIAK LLPGRTENNI KNHWNCSLKR RLEQFPSSTP  120
SGSSASSFVN QRNMIPESHE PFKIKKAAKI LEGIPWNYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-4721128128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743408
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022559424.11e-69transcription factor MYB3R-2-like
RefseqXP_022560459.11e-69transcription factor MYB3R-2-like
SwissprotQ9SPN37e-70MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLA0A3N6RRT52e-69A0A3N6RRT5_BRACR; Uncharacterized protein
STRINGBra008523.1-P2e-68(Brassica rapa)
STRINGfgenesh2_kg.6__3646__AT4G00540.24e-69(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.22e-69myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]