PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743386
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 1456aa    MW: 161525 Da    PI: 7.3313
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743386genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-20132187156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  676743386 132 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 187
                688999***********************************************999 PP

2START213.76.6e-673205401206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 
                ela+ a++elvk+a++eep+Wvks     +++n+de++++f+++k     +ea+r+sg+v+ ++  lve+l+d++ +W+e+++    +a+t++vissg  
  676743386 320 ELALNAMDELVKLAQSEEPLWVKSLdgerDELNQDEYMRTFSSTKPngLVSEASRTSGMVIINSLALVETLMDSN-RWTEMFPcnvaRATTTDVISSGma 418
                57899************************************99999999**************************.************************ PP

                ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
      START  89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                    galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++  ss ++R  +lpSg++++++sng+skvtwveh++++++++h l+r
  676743386 419 gtrnGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRENSGgSSVIIR--RLPSGCVVQDMSNGYSKVTWVEHAEYDENQIHHLYR 516
                ******************************************************86666666..************************************ PP

                HHHHHHHHHHHHHHHHHTXXXXXX CS
      START 183 slvksglaegaktwvatlqrqcek 206
                +l++sgl +g ++wvatlqrqce+
  676743386 517 PLLRSGLGFGSQRWVATLQRQCEC 540
                **********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.95E-20119189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-22120189IPR009057Homeodomain-like
PROSITE profilePS5007117.297129189IPR001356Homeobox domain
SMARTSM003899.5E-18130193IPR001356Homeobox domain
CDDcd000864.59E-18131189No hitNo description
PfamPF000464.2E-18132187IPR001356Homeobox domain
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PROSITE profilePS5084844.402311543IPR002913START domain
CDDcd088755.65E-112315539No hitNo description
SuperFamilySSF559615.71E-31315540No hitNo description
PfamPF018529.3E-60320540IPR002913START domain
SMARTSM002349.8E-43320540IPR002913START domain
SuperFamilySSF559613.08E-20559766No hitNo description
Gene3DG3DSA:3.30.200.208.8E-2210891168No hitNo description
CDDcd14137010891409No hitNo description
SuperFamilySSF561121.62E-7910931322IPR011009Protein kinase-like domain
SMARTSM002209.7E-8610941406IPR000719Protein kinase domain
PROSITE profilePS5001142.66110941406IPR000719Protein kinase domain
PfamPF000691.7E-6010951406IPR000719Protein kinase domain
PROSITE patternPS00107011001124IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.101.7E-5411691407No hitNo description
PROSITE patternPS00108012151227IPR008271Serine/threonine-protein kinase, active site
SuperFamilySSF561121.62E-7913511432IPR011009Protein kinase-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1456 aa     Download sequence    Send to blast
MNFGSLFDNT TGGGPTGPRI LYGNHTTAST VIPGGAMAQV AAASLFSPPI NTKSVYSSSG  60
LSLALEQPER GTNRGEASMR NNNNNNGGGD TFDGNTNNRR SREDEHESRS GSDNVEGISG  120
EDQDADDKPP RKKRYHRHTP QQIQELESMF KECPHPDEKQ RLELSKRLCL ETRQVKFWFQ  180
NRRTQMKTQL ERHENALLRQ ENDKLRAENM SIREAMRNPI CTNCGGPAML GDVSLEEHHL  240
RIENARLKDE LDRVCNLTGK FLGHHNHNSS LELAVGTNNG GNFSFPPDFG GGGCLPPPQQ  300
QQQQHSTVIN GIDQRSVLLE LALNAMDELV KLAQSEEPLW VKSLDGERDE LNQDEYMRTF  360
SSTKPNGLVS EASRTSGMVI INSLALVETL MDSNRWTEMF PCNVARATTT DVISSGMAGT  420
RNGALQLMNA ELQVLSPLVP VRNVNFLRFC KQHAEGVWAV VDVSIDTVRE NSGGSSVIIR  480
RLPSGCVVQD MSNGYSKVTW VEHAEYDENQ IHHLYRPLLR SGLGFGSQRW VATLQRQCEC  540
LAILMSSSVT SHENTSITPG GRKSMLKLAQ RMTFNFCSGI SAPSVHSWSK LTVGNVDPDV  600
RVMTRKSVDD PSEAPGIVLS AATSVWLPAS PQRLFDFLRN ERMRCEWDIL SNGGPMQEMA  660
HIAKGQDQGN AVSLLRSNPI NANQSSMLIL QETCIDASGA LVVYAPVDIP AMHVVMNGGD  720
SSYVALLPSG FAVLPDGGID GVSGDGEQRP VGGGSLLTVA FQILVNNLPT AKLTVESVET  780
GGVESRTNRA GGEIQLLVTV LGPRRVWSDH GGGAGGSARV SHKRRRMRVC CGFANADWGI  840
SMWLDFGWIW HIHLMLSLSF LLPVAASFCM MGVYVFRHFR RATSYHDRLV READVTASFS  900
PLCLFFCYIQ LVYLCCLLAL KREREREAKI PPGWVVERES TGRSNTTKRT AAKMNVMRRL  960
KSIASGRTSI SSDPGGDYGL KRAKLDQDND NLSAGCDPMQ VDQSTSCLDL LNSDMVSQES  1020
VAGTSNVPAA AEKSVDDQLP QVMIEMRIRD ERNANRDDKD MEPTVVNGSG TETGQVITTT  1080
VGGRDGKPKQ TISYMAQRVV GTGSFGVVFQ AKCLETGEQV AIKKVLQDKR YKNRELQIMR  1140
LQDHPNVVRL RHSFFSTTDK DELYLNLVLE FVPETVYRAS KHYTKMNQHM PIIFVQLYTY  1200
QICRALNYLH RVVGVCHRDI KPQNLLVNPQ THQLKICDFG SAKMLVPGEP NISYICSRYY  1260
RAPELIFGAT EYTNAIDMWS GGCVMAELLL GQPLFPGESG IDQLVEIIKV LIMIPRVSSS  1320
FFIESRVSYL THVYIHQILG TPTREEIRCM NPNYTEFKFP QIKAHPWHKI FHKRMPPEAV  1380
DLVSRLLQYS PNLRCTALEA CAHPFFDDLR DPNLSLPNGR ALPPLFNFTA QELAGASTEL  1440
RQRLIPGHCQ GTGSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5t31_A1e-1581067145631389Glycogen synthase kinase-3 beta
5t31_B1e-1581067145631389Glycogen synthase kinase-3 beta
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743386
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532530.0AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612299.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0D3DZP00.0A0A0D3DZP0_BRAOL; Uncharacterized protein
STRINGBo9g002480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]