PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676743386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 1456aa MW: 161525 Da PI: 7.3313 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.4e-20 | 132 | 187 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k 676743386 132 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 187 688999***********************************************999 PP | |||||||
2 | START | 213.7 | 6.6e-67 | 320 | 540 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.. CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.. 88 ela+ a++elvk+a++eep+Wvks +++n+de++++f+++k +ea+r+sg+v+ ++ lve+l+d++ +W+e+++ +a+t++vissg 676743386 320 ELALNAMDELVKLAQSEEPLWVKSLdgerDELNQDEYMRTFSSTKPngLVSEASRTSGMVIINSLALVETLMDSN-RWTEMFPcnvaRATTTDVISSGma 418 57899************************************99999999**************************.************************ PP ....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS START 89 ....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182 galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++++ ss ++R +lpSg++++++sng+skvtwveh++++++++h l+r 676743386 419 gtrnGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRENSGgSSVIIR--RLPSGCVVQDMSNGYSKVTWVEHAEYDENQIHHLYR 516 ******************************************************86666666..************************************ PP HHHHHHHHHHHHHHHHHTXXXXXX CS START 183 slvksglaegaktwvatlqrqcek 206 +l++sgl +g ++wvatlqrqce+ 676743386 517 PLLRSGLGFGSQRWVATLQRQCEC 540 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.95E-20 | 119 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-22 | 120 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 129 | 189 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-18 | 130 | 193 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.59E-18 | 131 | 189 | No hit | No description |
Pfam | PF00046 | 4.2E-18 | 132 | 187 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 164 | 187 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.402 | 311 | 543 | IPR002913 | START domain |
CDD | cd08875 | 5.65E-112 | 315 | 539 | No hit | No description |
SuperFamily | SSF55961 | 5.71E-31 | 315 | 540 | No hit | No description |
Pfam | PF01852 | 9.3E-60 | 320 | 540 | IPR002913 | START domain |
SMART | SM00234 | 9.8E-43 | 320 | 540 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.08E-20 | 559 | 766 | No hit | No description |
Gene3D | G3DSA:3.30.200.20 | 8.8E-22 | 1089 | 1168 | No hit | No description |
CDD | cd14137 | 0 | 1089 | 1409 | No hit | No description |
SuperFamily | SSF56112 | 1.62E-79 | 1093 | 1322 | IPR011009 | Protein kinase-like domain |
SMART | SM00220 | 9.7E-86 | 1094 | 1406 | IPR000719 | Protein kinase domain |
PROSITE profile | PS50011 | 42.661 | 1094 | 1406 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 1.7E-60 | 1095 | 1406 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 1100 | 1124 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:1.10.510.10 | 1.7E-54 | 1169 | 1407 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 1215 | 1227 | IPR008271 | Serine/threonine-protein kinase, active site |
SuperFamily | SSF56112 | 1.62E-79 | 1351 | 1432 | IPR011009 | Protein kinase-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1456 aa Download sequence Send to blast |
MNFGSLFDNT TGGGPTGPRI LYGNHTTAST VIPGGAMAQV AAASLFSPPI NTKSVYSSSG 60 LSLALEQPER GTNRGEASMR NNNNNNGGGD TFDGNTNNRR SREDEHESRS GSDNVEGISG 120 EDQDADDKPP RKKRYHRHTP QQIQELESMF KECPHPDEKQ RLELSKRLCL ETRQVKFWFQ 180 NRRTQMKTQL ERHENALLRQ ENDKLRAENM SIREAMRNPI CTNCGGPAML GDVSLEEHHL 240 RIENARLKDE LDRVCNLTGK FLGHHNHNSS LELAVGTNNG GNFSFPPDFG GGGCLPPPQQ 300 QQQQHSTVIN GIDQRSVLLE LALNAMDELV KLAQSEEPLW VKSLDGERDE LNQDEYMRTF 360 SSTKPNGLVS EASRTSGMVI INSLALVETL MDSNRWTEMF PCNVARATTT DVISSGMAGT 420 RNGALQLMNA ELQVLSPLVP VRNVNFLRFC KQHAEGVWAV VDVSIDTVRE NSGGSSVIIR 480 RLPSGCVVQD MSNGYSKVTW VEHAEYDENQ IHHLYRPLLR SGLGFGSQRW VATLQRQCEC 540 LAILMSSSVT SHENTSITPG GRKSMLKLAQ RMTFNFCSGI SAPSVHSWSK LTVGNVDPDV 600 RVMTRKSVDD PSEAPGIVLS AATSVWLPAS PQRLFDFLRN ERMRCEWDIL SNGGPMQEMA 660 HIAKGQDQGN AVSLLRSNPI NANQSSMLIL QETCIDASGA LVVYAPVDIP AMHVVMNGGD 720 SSYVALLPSG FAVLPDGGID GVSGDGEQRP VGGGSLLTVA FQILVNNLPT AKLTVESVET 780 GGVESRTNRA GGEIQLLVTV LGPRRVWSDH GGGAGGSARV SHKRRRMRVC CGFANADWGI 840 SMWLDFGWIW HIHLMLSLSF LLPVAASFCM MGVYVFRHFR RATSYHDRLV READVTASFS 900 PLCLFFCYIQ LVYLCCLLAL KREREREAKI PPGWVVERES TGRSNTTKRT AAKMNVMRRL 960 KSIASGRTSI SSDPGGDYGL KRAKLDQDND NLSAGCDPMQ VDQSTSCLDL LNSDMVSQES 1020 VAGTSNVPAA AEKSVDDQLP QVMIEMRIRD ERNANRDDKD MEPTVVNGSG TETGQVITTT 1080 VGGRDGKPKQ TISYMAQRVV GTGSFGVVFQ AKCLETGEQV AIKKVLQDKR YKNRELQIMR 1140 LQDHPNVVRL RHSFFSTTDK DELYLNLVLE FVPETVYRAS KHYTKMNQHM PIIFVQLYTY 1200 QICRALNYLH RVVGVCHRDI KPQNLLVNPQ THQLKICDFG SAKMLVPGEP NISYICSRYY 1260 RAPELIFGAT EYTNAIDMWS GGCVMAELLL GQPLFPGESG IDQLVEIIKV LIMIPRVSSS 1320 FFIESRVSYL THVYIHQILG TPTREEIRCM NPNYTEFKFP QIKAHPWHKI FHKRMPPEAV 1380 DLVSRLLQYS PNLRCTALEA CAHPFFDDLR DPNLSLPNGR ALPPLFNFTA QELAGASTEL 1440 RQRLIPGHCQ GTGSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5t31_A | 1e-158 | 1067 | 1456 | 31 | 389 | Glycogen synthase kinase-3 beta |
5t31_B | 1e-158 | 1067 | 1456 | 31 | 389 | Glycogen synthase kinase-3 beta |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676743386 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353253 | 0.0 | AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612299.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A0D3DZP0 | 0.0 | A0A0D3DZP0_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g002480.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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