PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676743108
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 257aa    MW: 28926.6 Da    PI: 9.7076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676743108genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.8e-21127176255
        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                gy+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+ +l+g
  676743108 127 GYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAAMRLRG 176
                8********.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-21127184IPR016177DNA-binding domain
PfamPF008474.7E-15127176IPR001471AP2/ERF domain
PROSITE profilePS5103222.827127184IPR001471AP2/ERF domain
SMARTSM003801.3E-30127192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-29128184IPR001471AP2/ERF domain
PRINTSPR003679.9E-11128139IPR001471AP2/ERF domain
CDDcd000189.08E-18128183No hitNo description
PRINTSPR003679.9E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
METTVDGHPL QLPVPLCSGV ETSQSFETYG LYKETSSVCM PFLGAITPFS NQTVTEPELF  60
DISSLFSPDP KPAPVSPRRV MDDSIAAIVG ENVLFGNNNN KVSNHFTATE TEDGVKRWRK  120
MPQKNGGYRG VRKRPWGRWS AEIRDRIGRC RHWLGTFDTA EEAARAYDAA AMRLRGTKAK  180
TNFVVHPFFP EEIAHTQSST TEEDTRRRRK KKRVDVRKCV KVTSVAQLFS DTFTSSSNNG  240
NVITPFNNFE KWALSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17119183671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206212RRRKKKR
2207212RRKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676743108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553817.11e-139ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M52e-82ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A078HPH51e-138A0A078HPH5_BRANA; BnaC02g22960D protein
STRINGBra008460.1-P1e-125(Brassica rapa)
STRINGBo2g095830.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-83ERF family protein