PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742796
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HD-ZIP
Protein Properties Length: 733aa    MW: 82003.3 Da    PI: 6.4386
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742796genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox665.1e-2199154156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  676742796  99 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 154
                7999************************************************9877 PP
2START2306.6e-722574851206
                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                e+a++a+ el+k+a+++ep+W +s     e++n+de+l++f+ +++      +s+ea+r++g+v+m++++l ++++d++ qW+e++a    ka+t++vi+
  676742796 257 EIANRATLELQKMATSDEPLWLRSLetgrEILNYDEYLKEFPHTQAsslhgrKSIEASRDVGIVFMDAHKLAQSFMDVG-QWKEMFAclisKAATVDVIR 355
                578999*************************************999*********************************.******************** PP

                TT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
      START  87 sg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                +g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+ ++w+ivdvSv+ e+++++  ++s+ +++++pSg++ie++snghskvtwveh dl++++
  676742796 356 QGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSPEKWAIVDVSVSLEEDNNTekEASLLKCRKRPSGCIIEDTSNGHSKVTWVEHLDLSAST 455
                ******************************************************99999889************************************** PP

                XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 177 phwllrslvksglaegaktwvatlqrqcek 206
                ++ l+rs+v++gla+ga++wvatlq +ce+
  676742796 456 VQPLFRSFVNTGLAFGARHWVATLQLHCER 485
                ****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-2285150IPR009057Homeodomain-like
SuperFamilySSF466891.21E-1991157IPR009057Homeodomain-like
PROSITE profilePS5007117.81596156IPR001356Homeobox domain
SMARTSM003899.6E-1898160IPR001356Homeobox domain
PfamPF000462.6E-1899154IPR001356Homeobox domain
CDDcd000862.32E-16103154No hitNo description
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PROSITE profilePS5084843.324248488IPR002913START domain
SuperFamilySSF559618.97E-31251485No hitNo description
CDDcd088751.52E-108252484No hitNo description
SMARTSM002344.0E-82257485IPR002913START domain
PfamPF018524.5E-65257485IPR002913START domain
Gene3DG3DSA:3.30.530.201.0E-6258484IPR023393START-like domain
SuperFamilySSF559611.65E-13514719No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MAVEMSSKQP TKDFFSSPAL SLSLAGIFRN ASSGSTNPEE DFLGRRVVDD EDRTVEMSSE  60
NSGPTRSRSE EELEGEEYQE EEEDEEQDGA GNKGNKRKRK KYHRHTTDQI RHMEALFKET  120
PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKAELE KLREENKAMR  180
ESFSKANSSC PNCGGGGPDE LHLENSKLKA ELDKLRTALG RTPYPLQASC SDDQQHRIGS  240
LEFYTGVFAL EKSRIAEIAN RATLELQKMA TSDEPLWLRS LETGREILNY DEYLKEFPHT  300
QASSLHGRKS IEASRDVGIV FMDAHKLAQS FMDVGQWKEM FACLISKAAT VDVIRQGEGP  360
SRIDGAIQLM FGEMQLLTPV VPTREVYFVR SCRQLSPEKW AIVDVSVSLE EDNNTEKEAS  420
LLKCRKRPSG CIIEDTSNGH SKVTWVEHLD LSASTVQPLF RSFVNTGLAF GARHWVATLQ  480
LHCERLVFFM ATNVPTKDSL GVTTLAGRKS VLKMAQRMTQ SFYRAIAASS YHQWTKITTK  540
TGQDMRVSSR KNLHDPGEPV GVIVCASSSL WLPVSPTLLF DFFRDEARRH EWDALSNGAH  600
VQSIASLSKG QDRGNSVSIQ DSSTNSYESV VVYAPVDINT TQLVIAGHDP SNIQILPSGF  660
SIIPDGVESR PLVITSTQED RNTQGGSLLT LAIQTLVNPS PAAKLNMESV ESVTNLVSVT  720
LHNIKRSLQI EDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676742796
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3602940.0AF360294.1 Arabidopsis thaliana putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.
GenBankBT0019560.0BT001956.1 Arabidopsis thaliana clone U09291 putative homeobox protein GLABRA2 (At1g79840) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_565223.10.0HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain-containing protein
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A178WBY60.0A0A178WBY6_ARATH; GL2
STRINGAT1G79840.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]