PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742406
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family FAR1
Protein Properties Length: 605aa    MW: 70922 Da    PI: 8.5252
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742406genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.27.5e-20132214390
       FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                Y++Y+ + GF+vrk+  kk+  ++++++  +vCskeg+r+e   k   ++ +++ tr+gCka+++  ++k+g++++ ++e +HnH+l+
  676742406 132 YKKYGGKHGFNVRKQLRKKK--KDKVVRICYVCSKEGFRKEPVVK---KSYSQPITRCGCKAHMTCYLQKTGRYKIVSFEPNHNHDLV 214
                9************9976665..5669***************9766...999**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.3E-17132214IPR004330FAR1 DNA binding domain
PfamPF105512.2E-27303387IPR018289MULE transposase domain
PROSITE profilePS509669.025523559IPR007527Zinc finger, SWIM-type
SMARTSM005750.0083534561IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MSIQMIQSNG LTKMKRTTSR WTIQMNHPDG AVGWRYQMEK RTWPLIILRT ILKFILWVEP  60
FHSTPFILPN HNFPPEEEDN SINEDETSVF EEEDDIANKE VTPLETNKET EKNDELFIEI  120
EFSFDETAHT AYKKYGGKHG FNVRKQLRKK KKDKVVRICY VCSKEGFRKE PVVKKSYSQP  180
ITRCGCKAHM TCYLQKTGRY KIVSFEPNHN HDLVITPMKH LLKVNRTFSV AQKQHANDAE  240
MSGISAKATI EMMSREVGGR ANLGFMEKDY RNYIYRKRTA EMEGRCWSND RSISDYNLFG  300
DVSCFDTTYK TNEYDRPFAP FVPVNHHKQT VVFGSALLYD ETTESFKWLF ETFLGAMSGK  360
KPKTILTDQC AAMANAIVTM FPETIHREDQ FAMDFGKCVY DHEEEEEWLS AWSEMLKKHE  420
LTKNKWLKSL FEVKEKWAMV YGRHTFTADM RCCNMEKKCI HQKFLVCSKK XMLQHGEEVY  480
TPEVFSLFQK EHTVISDYVA TKVSKSDMVY EYKVSYRGVA CEHLVKYDET NQTVHCSCMN  540
FSFAGILCCH ALKILDRNSI RRIPSAYILS RWSKEAKTRS IFYYHSERRN DTVKQSIGKR  600
YCNTP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152RKKKKD
2147153RKKKKDK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676742406
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0689014e-90AC068901.8 Arabidopsis thaliana chromosome 1 BAC F1O3 genomic sequence, complete sequence.
GenBankAC0790284e-90AC079028.11 Arabidopsis thaliana chromosome 1 BAC T32O22 genomic sequence, complete sequence.
GenBankCP0026844e-90CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456530.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLR0EZH30.0R0EZH3_9BRAS; Uncharacterized protein
STRINGXP_006281824.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-76FAR1-related sequence 5