PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676742308
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 373aa    MW: 41407 Da    PI: 6.8447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676742308genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.2e-13305350655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  676742308 305 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 350
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-15302361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.54E-12303352No hitNo description
Gene3DG3DSA:4.10.280.106.6E-14304362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDSNTHSHLY DPNHISSSSG SGLLRFRSAP SSVLAAFADN DEKTAFDSER LLLSRFASSN  60
GVNDDLGSPN PSDFEDKSSP VSLTNTSVSY AATLPPPHEP SSFLGLPPHY PRQSKGMMNT  120
IGLDQFLGMN THQHTKPVES NLLRQSSSPA GMFTNLSDQN GYGAMRSLMN YVGEEEDEES  180
PSNSNGLRRH SSLSSRPPSS LGMLSQIPEI PSESIANSFQ YSHWNDPATF IDNLSSLKRE  240
TDDDGKLFQN GESGNRMQLL SHHLSLPKSS STASDMVSVD KYLHLQDSVP CKIRAKRGCA  300
THPRSIAERV RRTRISERMR KLQELVPNMD KQTNTADMLD LAVDYIKDLQ RQYKILNENR  360
ANCKCTNKEK NLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676742308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006411489.10.0transcription factor bHLH130
SwissprotQ66GR30.0BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A1J3EZD00.0A0A1J3EZD0_NOCCA; Uncharacterized protein
STRINGXP_006411489.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62932745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-176bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]