PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676742278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 196aa MW: 22204.7 Da PI: 6.7814 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.2 | 5.6e-38 | 5 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC ++Cv+ap f+++q +++fa++h++FGasn +kll++lp e+r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a+l+ lk+ 676742278 5 PCGACKFLRRKCIHGCVFAPFFCHDQgASHFAAIHQVFGASNASKLLSHLPMEDRCEAAITIYYEAQARLQDPIYGCVSHIFSLQQQVVNLQAQLEILKQ 104 7*************************89*********************************************************************999 PP DUF260 100 e 100 + 676742278 105 Q 105 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.592 | 4 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-35 | 5 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MTGSPCGACK FLRRKCIHGC VFAPFFCHDQ GASHFAAIHQ VFGASNASKL LSHLPMEDRC 60 EAAITIYYEA QARLQDPIYG CVSHIFSLQQ QVVNLQAQLE ILKQQATQSM MATDSPSTDN 120 RNYYRDTKLQ QLQQSLDLHR HHNNHQDRSL ETESNSELKN IMASYSELDQ HFNTFNQYHN 180 GGNDILSANV GYISYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-33 | 3 | 100 | 9 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-33 | 3 | 100 | 9 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676742278 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013690686.1 | 1e-121 | LOB domain-containing protein 17-like | ||||
Refseq | XP_013747423.1 | 1e-121 | LOB domain-containing protein 17-like | ||||
Swissprot | Q9SLB6 | 6e-96 | LBD17_ARATH; LOB domain-containing protein 17 | ||||
TrEMBL | A0A078FPN0 | 1e-120 | A0A078FPN0_BRANA; BnaC04g48290D protein | ||||
STRING | Bo4g191540.1 | 1e-119 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 2e-88 | LBD family protein |
Publications ? help Back to Top | |||
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