PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676741406

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Nin-like

Protein Properties

Length: 819aa MW: 91533.9 Da PI: 6.2166

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676741406	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.9	1.2e-29	550	601	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ 676741406 550 AEKNITLDVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 601 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.12	540	621	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-25	553	601	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.19E-22	710	807	No hit	No description
SMART	SM00666	1.6E-24	721	804	IPR000270	PB1 domain
PROSITE profile	PS51745	27.921	721	804	IPR000270	PB1 domain
Pfam	PF00564	9.7E-18	722	802	IPR000270	PB1 domain
CDD	cd06407	9.80E-37	722	798	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.1E-19	722	801	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MDSNSLPIDP AMDSSFMDGL LLDGCWLETT DASEFLNYSP STSIAPFDPS SFMWSPPQDT 60 AICSSGLSQM YGQDCAERSS LEDHHQGKDL SSLNRRWWIG PSGPGSSVTE RLVQAVKHIK 120 DFTSERGGSL IQLWVPVDRG GKRVLTTKEQ PFSHDPMCQR LAHYREISVN YQFSAEQEDS 180 NSSNKELVGL PGRVFLGQVP EWTPDVRFFK NEEYSRVQHA QDCDVRGTLA IPVFEQGSKI 240 CLGVIEVVMT TQMVKLSPEL ESICRALQAV DLRSTELPIS PSLKGPDFSY QAALPEIRNL 300 LRCACETHKL PLAQTWVSCL KQSKTGCRHN DENYIRCVST IDDACYVGDP TVREFHEACS 360 EHHLLKGQGV VGEAFLTNGP CFSSDVSSYK KSEYPLSHHA TMFGLHGTVA IRLRCIHTGS 420 VDFVLEFFLP KTCRDIEEQR KMLNALSTIM AHVPRSLRTV TEKELEEEGD SMASEVTERG 480 ETLPKIENTC EVHESNSNPQ NVGLVVDGGT SEMDGELGFD YGKGLSVNEN STFSSAGGFT 540 RVTEKKRTKA EKNITLDVLR QYFAGSLKDA AKNIGVCPTT LKRICRQHGI QRWPSRKIKK 600 VGHSLQKIQR VIDSVQGVSG HHLPIGSFYA NFPKLASSQE ATSLLQQQSK QTTSLPSSHS 660 QPAKSPGSSC SHSSSCSSET QVNKEDPTNK TREETMTLSR SFKETQATHL SPSTSSQDDD 720 FLRIKVSYEE EKIRFRMRNS RRLKDLLWEI AKRFSIEDVS RYDLKYLDED NEWVLLRCDD 780 DVEECVDVCR SFPGQTIKLL LQLSSQHLQE RSSVSGSLS

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MDSNSLPIDP AMDSSFMDGL LLDGCWLETT DASEFLNYSP STSIAPFDPS SFMWSPPQDT  60
AICSSGLSQM YGQDCAERSS LEDHHQGKDL SSLNRRWWIG PSGPGSSVTE RLVQAVKHIK  120
DFTSERGGSL IQLWVPVDRG GKRVLTTKEQ PFSHDPMCQR LAHYREISVN YQFSAEQEDS  180
NSSNKELVGL PGRVFLGQVP EWTPDVRFFK NEEYSRVQHA QDCDVRGTLA IPVFEQGSKI  240
CLGVIEVVMT TQMVKLSPEL ESICRALQAV DLRSTELPIS PSLKGPDFSY QAALPEIRNL  300
LRCACETHKL PLAQTWVSCL KQSKTGCRHN DENYIRCVST IDDACYVGDP TVREFHEACS  360
EHHLLKGQGV VGEAFLTNGP CFSSDVSSYK KSEYPLSHHA TMFGLHGTVA IRLRCIHTGS  420
VDFVLEFFLP KTCRDIEEQR KMLNALSTIM AHVPRSLRTV TEKELEEEGD SMASEVTERG  480
ETLPKIENTC EVHESNSNPQ NVGLVVDGGT SEMDGELGFD YGKGLSVNEN STFSSAGGFT  540
RVTEKKRTKA EKNITLDVLR QYFAGSLKDA AKNIGVCPTT LKRICRQHGI QRWPSRKIKK  600
VGHSLQKIQR VIDSVQGVSG HHLPIGSFYA NFPKLASSQE ATSLLQQQSK QTTSLPSSHS  660
QPAKSPGSSC SHSSSCSSET QVNKEDPTNK TREETMTLSR SFKETQATHL SPSTSSQDDD  720
FLRIKVSYEE EKIRFRMRNS RRLKDLLWEI AKRFSIEDVS RYDLKYLDED NEWVLLRCDD  780
DVEECVDVCR SFPGQTIKLL LQLSSQHLQE RSSVSGSLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676741406

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493537	0.0	AB493537.1 Arabidopsis thaliana At1g76350 mRNA for hypothetical protein, partial cds, clone: RAAt1g76350.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006390206.1	0.0	protein NLP5
Refseq	XP_024008182.1	0.0	protein NLP5
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	V4KCL8	0.0	V4KCL8_EUTSA; Uncharacterized protein
STRING	XP_006390206.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein