PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676741356

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

SBP

Protein Properties

Length: 965aa MW: 105814 Da PI: 8.4288

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676741356	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.2	6.2e-40	124	199	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv++C++dls ak+yhrrhkvCe hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+ 676741356 124 CQVDNCKEDLSVAKDYHRRHKVCELHSKATKALVGEQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTL 199 *************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	9.6E-34	116	185	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.829	121	198	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.46E-37	122	202	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.0E-29	124	197	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	5.44E-7	766	859	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.8E-6	766	870	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.23E-7	766	856	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence Send to blast
MEEAGPISVH HPMGSKKRDL YSQMSTHQPY WLVSSQPQSR NDWNPKMWEW DSHRFEAKPV 60 DAEINVINNG GLSYEGEERR GLDLNLSSGF DAVEDTPMIV TSPNKRVKSG SPGGGGGGGN 120 YPKCQVDNCK EDLSVAKDYH RRHKVCELHS KATKALVGEQ MQRFCQQCSR FHLLSEFDEG 180 KRSCRRRLAG HNRRRRKTLT EEITSGVVAP GISDNNANMD IMALLTALAC AQGRKDAQPN 240 GSPAVPQREQ LLQILNKINA LPLPMDLVSK LNNIGILARK NLDQPSAMNP QNDMNGASSP 300 STMDLLAVLS RTLGSSAPEA LAFLSQGGFA NKDSNDKTKL ASSDHAAATN LEKRTLEFPS 360 FGGGERSSSS NPSPSQDSDS RGQDTRSSLS LQLFTSSPED ESQPTVASSG KYYSSASSNP 420 VEDRSPSSSP VMQELFPMQT SPETMRSNNC KNSSPSPRNS RLPLDLFGPS NRGAAANPNF 480 RVSSHQSGYA SSGSDYSPPS LNSDAQDRTG KIVFKLLGKD PSQLPGTLRT EIYSWLSSIP 540 SEMESHIRPG CVILSVYVAM SASAWEQFEE NLLQRVSSLV QDSEFWSNAR FLVNTGRQLA 600 SYKHGRIRLS KSWRTLSSPE LITVSPFAVV AGEETTLVVR GRSLTNDGIS FRCAHMGNYT 660 SMKVTGTAHR STKFDELNVN RFKVKGTSPG SLGRCFVEVE NGFRSDSFPL IIANATICKE 720 LNLLEDEFHP KDVTEEQTCN SDQRNLGKDG LMNKDSLDML AEIQLLSRAV KRKNTKMAET 780 LIQYFVNPIA KKFIFLPNIK GPGDITPLHL AASTSGSDDM IDVLTNDPQE IGLSSWNTLI 840 DASGQTPFSY AAMRNNHSYN TLVARKLADK RNGQISLNIE NGIDQIGLSK RISSELKRSC 900 NTCASVALKY QKKVSGSHRL FPTPIIHSML AVATVCVCVC VFMHAFPIVR QGSHFSWGGL 960 DYGSI

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence Send to blast

MEEAGPISVH HPMGSKKRDL YSQMSTHQPY WLVSSQPQSR NDWNPKMWEW DSHRFEAKPV  60
DAEINVINNG GLSYEGEERR GLDLNLSSGF DAVEDTPMIV TSPNKRVKSG SPGGGGGGGN  120
YPKCQVDNCK EDLSVAKDYH RRHKVCELHS KATKALVGEQ MQRFCQQCSR FHLLSEFDEG  180
KRSCRRRLAG HNRRRRKTLT EEITSGVVAP GISDNNANMD IMALLTALAC AQGRKDAQPN  240
GSPAVPQREQ LLQILNKINA LPLPMDLVSK LNNIGILARK NLDQPSAMNP QNDMNGASSP  300
STMDLLAVLS RTLGSSAPEA LAFLSQGGFA NKDSNDKTKL ASSDHAAATN LEKRTLEFPS  360
FGGGERSSSS NPSPSQDSDS RGQDTRSSLS LQLFTSSPED ESQPTVASSG KYYSSASSNP  420
VEDRSPSSSP VMQELFPMQT SPETMRSNNC KNSSPSPRNS RLPLDLFGPS NRGAAANPNF  480
RVSSHQSGYA SSGSDYSPPS LNSDAQDRTG KIVFKLLGKD PSQLPGTLRT EIYSWLSSIP  540
SEMESHIRPG CVILSVYVAM SASAWEQFEE NLLQRVSSLV QDSEFWSNAR FLVNTGRQLA  600
SYKHGRIRLS KSWRTLSSPE LITVSPFAVV AGEETTLVVR GRSLTNDGIS FRCAHMGNYT  660
SMKVTGTAHR STKFDELNVN RFKVKGTSPG SLGRCFVEVE NGFRSDSFPL IIANATICKE  720
LNLLEDEFHP KDVTEEQTCN SDQRNLGKDG LMNKDSLDML AEIQLLSRAV KRKNTKMAET  780
LIQYFVNPIA KKFIFLPNIK GPGDITPLHL AASTSGSDDM IDVLTNDPQE IGLSSWNTLI  840
DASGQTPFSY AAMRNNHSYN TLVARKLADK RNGQISLNIE NGIDQIGLSK RISSELKRSC  900
NTCASVALKY QKKVSGSHRL FPTPIIHSML AVATVCVCVC VFMHAFPIVR QGSHFSWGGL  960
DYGSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-31	114	197	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676741356

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128184.1	0.0	PREDICTED: squamosa promoter-binding-like protein 16 isoform X1
Swissprot	Q700C2	0.0	SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBL	A0A398ABP0	0.0	A0A398ABP0_BRACM; Uncharacterized protein
STRING	Bo2g091010.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3999	25	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	0.0	SBP family protein