PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676741296
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family Trihelix
Protein Properties Length: 574aa    MW: 64929.1 Da    PI: 6.8717
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676741296genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix88.48.1e-281094187
   trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
               rW++qe+laL+++r++m+ ++r++  k+plW+evs+km+e g+ r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  676741296 10 RWPRQETLALLKIRSDMGIAFRDAGVKGPLWDEVSRKMAELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 94
               8********************************************************************975544..6*******85 PP
2trihelix105.44.2e-33371456187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                rW+k e+ aLi++r++++++++++  k+plWee+s+ mr+ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  676741296 371 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 456
                8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.13769IPR001005SANT/Myb domain
CDDcd122032.01E-22974No hitNo description
PfamPF138371.5E-17995No hitNo description
PROSITE profilePS500906.922967IPR017877Myb-like domain
PROSITE profilePS500907.236364428IPR017877Myb-like domain
SMARTSM007170.0017368430IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-4368427IPR009057Homeodomain-like
PfamPF138373.1E-22370457No hitNo description
CDDcd122031.96E-27371435No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MSDRGFGGNR WPRQETLALL KIRSDMGIAF RDAGVKGPLW DEVSRKMAEL GYIRNAKKCK  60
EKFENVYKYH KRTKEGRTGK SEGKTYRFFD QLEALETQST SSSLHHQPVQ PQPLQTQLPL  120
RPHSNNNNNS SSIFSTPPPV TTIMPPMTNV TALPSSSIPP YTQPVNIPSF PTISGDFLSD  180
NSTSSSSSYS TSSDVEIGGG TTTSKKKRKR KWKEFFERLM KQVVDKQEEL QRKFLEAVEK  240
REHERMVREE SWRVQEIARI NREHEILAQE RSMSAAKDAA VMAFLQKLSE KPHPQGQSIA  300
QPQTQPQQAR SQMQVNNNNI QQQTPQTPQP QPPPLAQPVV TGLDAAKTDN GDQNMTTPVS  360
ASASGAVSSS RWPKVEIEAL IKLRTNLDSK YQENGPKGPL WEEISAGMRR LGFNRNSKRC  420
KEKWENINKY FKKVKESNKK RPEDSKTCPY FHQLDALYRE RNKFHTNNNN NNIASSSGLI  480
KPDNSVPLMV QPEQQWPPAT TTTTTATVAA TAQPDQQHPP PPQTLDQNFE DEEGTDEEEY  540
DDEEDEEENE GEEEEGGGEF ELVPSNNNKT TNNL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204210KKKRKRK
2205210KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676741296
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446335.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391171e-147TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLD7KTX90.0D7KTX9_ARALL; Uncharacterized protein
STRINGscaffold_202643.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.10.0Trihelix family protein