PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676741292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | WRKY | ||||||||
Protein Properties | Length: 497aa MW: 55018.2 Da PI: 8.2903 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.5 | 3.8e-30 | 130 | 188 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers+ +++v+++Y geH+h+k 676741292 130 MEDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCKAKKQLERSS-GGHIVDTVYFGEHDHPK 188 58****************************************.***************85 PP | |||||||
2 | WRKY | 106.1 | 1.8e-33 | 303 | 361 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d++++++tYeg+H+h+ 676741292 303 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSHDTNLLITTYEGKHDHD 361 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.527 | 125 | 189 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-24 | 126 | 189 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-26 | 127 | 189 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-34 | 130 | 188 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-23 | 131 | 187 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-34 | 290 | 363 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-29 | 297 | 363 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.486 | 298 | 363 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.4E-39 | 303 | 362 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-26 | 304 | 360 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MAEVGKVMAG DMELANSSET KPVDVVATDK MEATPVTIVT KTESVVQGCE TKECSNEIPE 60 STDSKKQLLL PESTDSKKQL QLVPFTKASV SEDEDVTPEK APKVPESSST VLSLQSGSEG 120 SSPFIREKVM EDGYNWRKYG QKLVKGNEFV RSYYRCTHPN CKAKKQLERS SGGHIVDTVY 180 FGEHDHPKPL GGAVPINHDR RSDVLVAVSK EKASGSIVQT HRQTESPKNH RGLHVSIVPS 240 ADDVKTAVSQ ASRIKGDNTH KEINSPVAKR RKKGGGNIEP ISMERSNNDS RNVVHTQTLF 300 DIVNDGYRWR KYGQKSVKGS PYPRSYYRCS SSGCPVKKHV ERSSHDTNLL ITTYEGKHDH 360 DMPPGRIVTH NNTLDSEVDD KEPSAKDTEV NKTPQSSALQ TITKDQHVED HSRKKAKTNG 420 FEKSLDKGPA LDAKPKEEIK DRSDVTKDHA ANHVKSEIKS EPKPEPKSDD KTIVCHENTA 480 RTVESHEQKP KAESGQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-47 | 129 | 365 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676741292 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418534.1 | 0.0 | WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 0.0 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | E4MX10 | 0.0 | E4MX10_EUTHA; mRNA, clone: RTFL01-10-D23 | ||||
TrEMBL | V4L010 | 0.0 | V4L010_EUTSA; Uncharacterized protein | ||||
STRING | XP_006418533.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7949 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 0.0 | zinc-dependent activator protein-1 |
Publications ? help Back to Top | |||
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