PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676741004

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 439aa MW: 49119 Da PI: 6.9071

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676741004	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	330	363	15	53
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 ++++++ +L++++ + +K + a++L++A+ YI+ 676741004 330 KLRDKITTLQQIVSPF-----GKTDTASVLQEAITYINF 363 7899999999999998.....8***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.994	315	364	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.60E-4	329	369	No hit	No description
SuperFamily	SSF47459	4.84E-9	329	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-7	330	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MIREECTPSS SWWEDVQHHH HNDHANSIST SFYHKNSNGN NNNNSNANGS CEGDNLSIST 60 VNASDRFDLT AESSNRHSLS APAPPASTSD ELLRDHVVSS NNHLWNLAYL PGRSLGDQMM 120 DHHHHHNQIT SSRNNSTTTS ELPFEPVCNS ANGNGWIYET NQVRYAQSSE ERLSKLTDLV 180 GKHWSLAPPD NPDMNHNLHH QFDQTNDDVS MYRQALGVKN EEDLCYNSGL SGGTSLFHDA 240 IESSRSFLDI RLSRPLTDIN PSFKPCFKAL NLSEFNKKEH QSASLATVRL GATNTGKKKR 300 CDEGSDEVSK KAKCGGGSTL SPEKELPKAK LRDKITTLQQ IVSPFGKTDT ASVLQEAITY 360 INFYQEQVKL LSTPYMKNSS IKDPWGGWDR DEHNKRGPKH LDLKSRGLCL VPISCTPIAY 420 RDNSATDYWS PSYRGSLYR

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MIREECTPSS SWWEDVQHHH HNDHANSIST SFYHKNSNGN NNNNSNANGS CEGDNLSIST  60
VNASDRFDLT AESSNRHSLS APAPPASTSD ELLRDHVVSS NNHLWNLAYL PGRSLGDQMM  120
DHHHHHNQIT SSRNNSTTTS ELPFEPVCNS ANGNGWIYET NQVRYAQSSE ERLSKLTDLV  180
GKHWSLAPPD NPDMNHNLHH QFDQTNDDVS MYRQALGVKN EEDLCYNSGL SGGTSLFHDA  240
IESSRSFLDI RLSRPLTDIN PSFKPCFKAL NLSEFNKKEH QSASLATVRL GATNTGKKKR  300
CDEGSDEVSK KAKCGGGSTL SPEKELPKAK LRDKITTLQQ IVSPFGKTDT ASVLQEAITY  360
INFYQEQVKL LSTPYMKNSS IKDPWGGWDR DEHNKRGPKH LDLKSRGLCL VPISCTPIAY  420
RDNSATDYWS PSYRGSLYR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676741004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493488	0.0	AB493488.1 Arabidopsis thaliana At1g31050 mRNA for hypothetical protein, partial cds, clone: RAAt1g31050.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006415377.1	0.0	transcription factor bHLH111 isoform X1
Swissprot	Q9FYJ6	0.0	BH111_ARATH; Transcription factor bHLH111
TrEMBL	V4K7X9	0.0	V4K7X9_EUTSA; Uncharacterized protein
STRING	XP_006415377.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8055	19	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	0.0	bHLH family protein