PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676740962
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 270aa    MW: 29576.9 Da    PI: 4.9412
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676740962genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51.1e-20129178255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  676740962 129 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 178
                7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.594129186IPR001471AP2/ERF domain
CDDcd000188.99E-23129188No hitNo description
SuperFamilySSF541711.83E-22129187IPR016177DNA-binding domain
PfamPF008471.9E-14129178IPR001471AP2/ERF domain
SMARTSM003801.5E-37129192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-33129187IPR001471AP2/ERF domain
PRINTSPR003675.5E-12130141IPR001471AP2/ERF domain
PRINTSPR003675.5E-12152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRWHVANQGE DKETRAVDPE GIKPVVNDVY SFDEDPIVGR FNRFGTEMSA MVSALTQVVS  60
SRSLTSCSVE TQGGNSSSSS IELNRGGFGI DSTIPLSMSP CDRLHTSIGP IEESTNNELQ  120
EEVKEKKRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFD TAEAAARAYD EAALRFRGSK  180
AKVNFPEDAK ILPPPPPPLP PAAAVANEGY VNLKDYLSYT QLLQSSVEQS FTGQGQEART  240
EILEHSLTEQ PLPPLDSGLS SSDFPGPSSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23128186160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676740962
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460571.11e-104PREDICTED: ethylene-responsive transcription factor ERF110-like
SwissprotQ70II37e-63EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLA0A178U7F52e-83A0A178U7F5_ARATH; Uncharacterized protein
STRINGXP_006402191.12e-67(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-55ethylene response factor 110