PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739978
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 179aa    MW: 19924.5 Da    PI: 10.5836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739978genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-2054103355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ykGVr+++ +g+++AeIrdp++ng  +r +lg++ t+eeAa a+++a+ k++g
  676739978  54 YKGVRRRP-WGKYAAEIRDPNKNG--ARMWLGTYETPEEAAVAYDRAAFKMRG 103
                9*******.***********8887..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.2E-3953117IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2453112IPR016177DNA-binding domain
CDDcd000181.34E-3053113No hitNo description
PROSITE profilePS5103224.06553111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3253112IPR001471AP2/ERF domain
PRINTSPR003672.7E-135465IPR001471AP2/ERF domain
PfamPF008473.6E-1454103IPR001471AP2/ERF domain
PRINTSPR003672.7E-1393113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEGELRWDNG SAVLDWIRRQ LLEEDDPDLT ASVSLAMDSS SSSSSVPPRR GGNYKGVRRR  60
PWGKYAAEIR DPNKNGARMW LGTYETPEEA AVAYDRAAFK MRGSKAKLNF PHLISSTHEA  120
EPVRVTNGGN KRQRSPEPNS PAAKRRNNTN IINLTARLPS LGVKICISKT PSMTDTMRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-3050116268ATERF1
3gcc_A2e-3050116268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676739978
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111538.12e-92PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_013694248.12e-92ethylene-responsive transcription factor 13-like
SwissprotQ8L9K13e-41ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A397XXB52e-91A0A397XXB5_BRACM; Uncharacterized protein
TrEMBLA0A3N6QHF82e-91A0A3N6QHF8_BRACR; Uncharacterized protein
TrEMBLA0A3P6DX058e-86A0A3P6DX05_BRAOL; Uncharacterized protein
STRINGBo9g001020.14e-84(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-42ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]