PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676739854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 26772.2 Da PI: 6.723 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.3 | 1.8e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++ ++++sl+yeA+ r+ +Pv+Gavg++++++++++q+++e++ 676739854 2 SCNGCRVLRKGCSENCILRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQCAALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQAAVETV 101 6***********************************************************************************************9998 PP DUF260 96 ll 97 l+ 676739854 102 LR 103 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.287 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSCNGCRVLR KGCSENCILR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQC 60 AALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLRPI PELLTRDGGF 120 GGFPSPTSDE ASEICTEMLN DSGDRNIYHH CRFSSSRSRS TASPPKRKRL ASEQQQQRPS 180 SSSELDLSLI PTFPIKTTPL KEETVRPETP SIYSEESDTT TSFPDNGERF LRGGGETTKL 240 LNLFA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676739854 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013691297.1 | 1e-155 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 1e-135 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A3P5YEH0 | 1e-153 | A0A3P5YEH0_BRACM; Uncharacterized protein | ||||
STRING | Bra036040.1-P | 1e-153 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-121 | LOB domain-containing protein 38 |