PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676739730

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

Dof

Protein Properties

Length: 320aa MW: 34585.8 Da PI: 8.8032

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676739730	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.4e-39	12	71	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ +kcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk s 676739730 12 DHPQKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKPS 71 6789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-34	1	65	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.4E-33	13	69	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	15	69	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	17	53	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010067	Biological Process	procambium histogenesis
GO:0010087	Biological Process	phloem or xylem histogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDGGRRLRPP HDHPQKCPRC ESTHTKFCYY NNYSLSQPRY FCKTCRRYWT KGGTLRNIPV 60 GGGCRKNKKP SSSNSSSSTS SGKKPSNIVT TNTNDFMALA HSHQHYQNAS LGFSHFGGNG 120 MMGSYTAPDH GNVGFLESKY GGLISQSPRP IDFLDSKFDL MGVNNDNLVM VDHGSNGDHH 180 HHHTHHMGLA HGLGLNNNNN NNNNGGFHGI SPGSNGNGGG GLMDISTCQR LMLSNYEHHH 240 YNHHEDNQRV TSIMDVKPSP KLLSLDWQQD QGYSDGSGNG GGGKSDGGGY GGGGYINGLG 300 SSWNGLMNGY GSSTKTNSLV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	281	288	GGKSDGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Promotes expression (PubMed:19915089). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Involved in the regulation of interfascicular cambium formation and vascular tissue development, particularly at a very early stage during inflorescence stem development; promotes both cambium activity and phloem specification, but prevents xylem specification (PubMed:19915089). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:19915089, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00580	DAP	Transfer from AT5G62940	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676739730

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB009053	0.0	AB009053.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQB2.
GenBank	BT020467	0.0	BT020467.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBank	BT020576	0.0	BT020576.1 Arabidopsis thaliana At5g62940 gene, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866523.1	1e-150	dof zinc finger protein DOF5.6
Swissprot	Q9FM03	1e-139	DOF56_ARATH; Dof zinc finger protein DOF5.6
TrEMBL	A0A1J3ECI2	1e-153	A0A1J3ECI2_NOCCA; Dof zinc finger protein DOF5.6 (Fragment)
TrEMBL	A0A1J3H3L9	1e-153	A0A1J3H3L9_NOCCA; Dof zinc finger protein DOF5.6 (Fragment)
TrEMBL	A0A1J3IWB0	1e-154	A0A1J3IWB0_NOCCA; Dof zinc finger protein DOF5.6
STRING	scaffold_802976.1	1e-150	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6374	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-122	Dof family protein

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]