PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676739564

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

bHLH

Protein Properties

Length: 365aa MW: 40555.5 Da PI: 4.9417

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676739564	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.5	0.00014	311	352	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +E+ R d+i++a+ L +++P a K ++ L +A++Y+k L 676739564 311 NEQSRKDKIRTALKILESIVPGA------KgNEALLLLDEAIDYLKLL 352 69******************9......5599999*******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.232	303	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-6	311	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-4	312	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009826	Biological Process	unidimensional cell growth
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MVCQSPGKTR FRALKYETGD ANRPTIVVRV IACFQPMDNC QSMPLDTRQR DLPPQACFED 60 IAARSLHPGV PLPDLGKLYA AELQARGFQP PPFQSLLWSH DKESCGKRFS LSDMRSWCAT 120 ATTPHGALES SQKGLMIFDQ TGNQTRLLRC PFPLRFPSPA AAEPVKLSEL QHGLENGFRE 180 DRVTLKEFDE NYINGKESEM HEDTEEINAL LYSDDDYGDA DDDCESDDEV MSTGHSPYPV 240 EQVGNKRALE GIDGPCKRQK LLDKVENISG SSSLVGTKSS TKHNGSSFRK DEKLPESNIS 300 TKEDTGSGLS NEQSRKDKIR TALKILESIV PGAKGNEALL LLDEAIDYLK LLKRDLISTE 360 IKNDC

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MVCQSPGKTR FRALKYETGD ANRPTIVVRV IACFQPMDNC QSMPLDTRQR DLPPQACFED  60
IAARSLHPGV PLPDLGKLYA AELQARGFQP PPFQSLLWSH DKESCGKRFS LSDMRSWCAT  120
ATTPHGALES SQKGLMIFDQ TGNQTRLLRC PFPLRFPSPA AAEPVKLSEL QHGLENGFRE  180
DRVTLKEFDE NYINGKESEM HEDTEEINAL LYSDDDYGDA DDDCESDDEV MSTGHSPYPV  240
EQVGNKRALE GIDGPCKRQK LLDKVENISG SSSLVGTKSS TKHNGSSFRK DEKLPESNIS  300
TKEDTGSGLS NEQSRKDKIR TALKILESIV PGAKGNEALL LLDEAIDYLK LLKRDLISTE  360
IKNDC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Involved in stem elongation, probably by regulating a subset of genes involved in this process. {ECO:0000269\|PubMed:16936072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676739564

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353013	1e-174	AK353013.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-09-O23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019094121.1	1e-165	PREDICTED: transcription factor SAC51-like
Swissprot	Q9FMF4	1e-155	SAC51_ARATH; Transcription factor SAC51
TrEMBL	A0A0D3BF51	0.0	A0A0D3BF51_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6BBN7	0.0	A0A3P6BBN7_BRAOL; Uncharacterized protein
STRING	Bo3g101410.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5546	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-06	bHLH family protein

Publications ? help Back to Top
Imai A, et al. The dwarf phenotype of the Arabidopsis acl5 mutant is suppressed by a mutation in an upstream ORF of a bHLH gene. Development, 2006. 133(18): p. 3575-85 [PMID:16936072] Imai A,Komura M,Kawano E,Kuwashiro Y,Takahashi T A semi-dominant mutation in the ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana. Plant J., 2008. 56(6): p. 881-90 [PMID:18694459] Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cai Q, et al. The SAC51 Family Plays a Central Role in Thermospermine Responses in Arabidopsis. Plant Cell Physiol., 2016. 57(8): p. 1583-92 [PMID:27388339] Yamamoto M,Takahashi T Thermospermine enhances translation of SAC51 and SACL1 in Arabidopsis. Plant Signal Behav, 2017. 12(1): p. e1276685 [PMID:28045577]