PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676739250
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 184aa    MW: 20975.1 Da    PI: 5.0833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676739250genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-202068355
        AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a++ l+g
  676739250 20 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDSAALHLRG 68
               9****998.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-131968IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-311977IPR001471AP2/ERF domain
SMARTSM003801.6E-351982IPR001471AP2/ERF domain
PROSITE profilePS5103223.0511976IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-222077IPR016177DNA-binding domain
CDDcd000181.69E-222078No hitNo description
PRINTSPR003672.7E-102031IPR001471AP2/ERF domain
PRINTSPR003672.7E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MENNHVSQRE QRCSVDQRSY RGVRRRKWGK WVSEIREPGK KTRIWLGSYE TAEMAAAAYD  60
SAALHLRGPG THLNFPEHAG SFPQPESSSS EHVQAAAQQA ALMFKPGVSS TEQAIESSQG  120
LSRVGLSPDQ IQAINEYPLD SPRMGWMQDL EVNDYEELYG RFFGQCDRDE FFEMQQLQSI  180
WDSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-171881468ATERF1
3gcc_A7e-171881468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676739250
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415065.11e-106ethylene-responsive transcription factor ERF022
SwissprotQ9LQ282e-99ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLV4L1041e-105V4L104_EUTSA; Uncharacterized protein
STRINGXP_006415065.11e-106(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-100ERF family protein