PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738834
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family RAV
Protein Properties Length: 354aa    MW: 39649.9 Da    PI: 9.9977
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738834genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-1263111155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa  ++ a++k++g
  676738834  63 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAAHFYDIAARKFRG 111
                89****9888.8*********3.....5*************************98 PP
2B31054e-33191292196
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+ tpsdv+k++rlv+pk++ae+h      +++ ++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++  s+++l++
  676738834 191 FEKAVTPSDVGKLNRLVIPKHHAEKHfplppqSLSVTKGVLINFEDVTGKVWRFRYSYWNSSQSYVLTKGWSRFVKDKNLRAGDIVTFERSTGSDRQLYI 290
                89*************************99999777889***************************************************88668888877 PP

                EE CS
         B3  95 kv 96 
                 +
  676738834 291 NW 292
                65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.95E-2463118No hitNo description
SuperFamilySSF541712.75E-1663119IPR016177DNA-binding domain
PfamPF008477.2E-763111IPR001471AP2/ERF domain
SMARTSM003802.9E-2664125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1964119IPR001471AP2/ERF domain
PROSITE profilePS5103219.78364119IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-39186299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-32189291IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-30190290No hitNo description
PROSITE profilePS5086314.508191296IPR003340B3 DNA binding domain
SMARTSM010191.7E-26191294IPR003340B3 DNA binding domain
PfamPF023622.6E-30191292IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVSSCIDENS TSESFLAATA LTTKFSAPPP PPLRIYRMGS GGSSIVLDSE NNVETESRKL  60
PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEEEAAH FYDIAARKFR GRDAVVNFKT  120
FLAGEEGDNN SELSFLEAHS KAEIVDMLRK HTYADELEQS NKRRFLSAAT NGKLYGSNTT  180
QTVLKTSEVL FEKAVTPSDV GKLNRLVIPK HHAEKHFPLP PQSLSVTKGV LINFEDVTGK  240
VWRFRYSYWN SSQSYVLTKG WSRFVKDKNL RAGDIVTFER STGSDRQLYI NWKIRSGPRK  300
NPCQVVVRLF GVDIFNVTST KPNNVGAACG GKRSPDVDMF ALRCAKKQAI INAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-6218729710119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738834
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716688.10.0AP2/ERF and B3 domain-containing transcription repressor RAV2
SwissprotP822800.0RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A3P6D8B20.0A0A3P6D8B2_BRAOL; Uncharacterized protein
STRINGAT1G68840.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.20.0related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]