PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738208
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 274aa    MW: 31131 Da    PI: 7.1958
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738208genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-093177347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE +++ +a + +  +   +W ++a++++ g+t  ++  ++ k+
        676738208 31 SWTKEENKKFERALAVYADDtpdRWFKVAAMIP-GKTISDVMRHYSKL 77
                     7*****************99*************.***********886 PP
2Myb_DNA-binding409.2e-13134178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r +   +t+ q+ s+ qky
        676738208 134 PWTEEEHRRFLLGLLKYGKGDWRNISRNFVGSKTPTQVASHAQKY 178
                      8****************************999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.4612780IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.2E-42876IPR009057Homeodomain-like
SMARTSM007173.2E-82880IPR001005SANT/Myb domain
SuperFamilySSF466891.51E-113085IPR009057Homeodomain-like
PfamPF002491.0E-73177IPR001005SANT/Myb domain
CDDcd001675.52E-83177No hitNo description
PROSITE profilePS5129418.108127183IPR017930Myb domain
SuperFamilySSF466891.08E-15129182IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16131182IPR006447Myb domain, plants
SMARTSM007179.9E-11131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-11131183IPR009057Homeodomain-like
PfamPF002493.9E-10134178IPR001005SANT/Myb domain
CDDcd001677.09E-10134178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
METLQPLLLS HVPTSDHRFV VQEMMCLQSS SWTKEENKKF ERALAVYADD TPDRWFKVAA  60
MIPGKTISDV MRHYSKLEED LFDIEAGLVP IPGYPSATPC GFDQLVSPRD FDLYRKRPNG  120
GARGFDQDRR KGVPWTEEEH RRFLLGLLKY GKGDWRNISR NFVGSKTPTQ VASHAQKYYQ  180
RQLSGAKDKR RPSIHDITTV NLLNNNISRP LSDHDGFFQQ TDDPKLGFTD SDNAEEGVMF  240
LGQNLSSVLS PYEPAFKLTG TNIYGDGAYC LTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1632941173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00489DAPTransfer from AT5G05790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738208
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445577.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-72DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A397XQG40.0A0A397XQG4_BRACM; Uncharacterized protein
TrEMBLM4CY370.0M4CY37_BRARP; Uncharacterized protein
TrEMBLV4N5020.0V4N502_EUTSA; Uncharacterized protein
STRINGBra009134.1-P0.0(Brassica rapa)
STRINGXP_006399038.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43402657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05790.10.0MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]