PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676738184
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NF-X1
Protein Properties Length: 1154aa    MW: 129502 Da    PI: 8.3448
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676738184genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.26.3e-07509528120
   zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                C +HkC ++CH G+CppC++
  676738184 509 CNIHKCREICHDGDCPPCRE 528
                449***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF094394.0E-957164IPR019009Signal recognition particle receptor, beta subunit
CDDcd041052.09E-4859272No hitNo description
SuperFamilySSF525408.05E-1471144IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3007.0E-1176160IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525408.05E-14172271IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.0E-14178271IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF094392.8E-12179259IPR019009Signal recognition particle receptor, beta subunit
PROSITE patternPS013590346410IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.02E-6445493No hitNo description
SMARTSM004388.1457475IPR000967Zinc finger, NF-X1-type
PfamPF014223.4457474IPR000967Zinc finger, NF-X1-type
CDDcd060083.99E-11499547No hitNo description
SMARTSM004389.3E-5509528IPR000967Zinc finger, NF-X1-type
PfamPF014221.4E-4509527IPR000967Zinc finger, NF-X1-type
CDDcd060081.49E-8552592No hitNo description
SMARTSM004380.038562581IPR000967Zinc finger, NF-X1-type
PfamPF014220.063562580IPR000967Zinc finger, NF-X1-type
CDDcd060084.80E-8606649No hitNo description
SMARTSM004380.073616636IPR000967Zinc finger, NF-X1-type
PfamPF014220.0031616635IPR000967Zinc finger, NF-X1-type
SMARTSM0043854736757IPR000967Zinc finger, NF-X1-type
PfamPF014224.6746756IPR000967Zinc finger, NF-X1-type
SMARTSM00438200765810IPR000967Zinc finger, NF-X1-type
PfamPF01422100765774IPR000967Zinc finger, NF-X1-type
SMARTSM004389.4847878IPR000967Zinc finger, NF-X1-type
PfamPF014220.24847858IPR000967Zinc finger, NF-X1-type
CDDcd060081.82E-4876917No hitNo description
SMARTSM004380.33888906IPR000967Zinc finger, NF-X1-type
PfamPF014229.9889905IPR000967Zinc finger, NF-X1-type
SMARTSM0043815951972IPR000967Zinc finger, NF-X1-type
PfamPF0142211953965IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1154 aa     Download sequence    Send to blast
MENLEDLKIM AEQWSNQGIE YLQKIPPPQL YAAVGLLLLT TILLLSISTV EEVNVSQATI  60
LDLGLMQSII SSLVLRDGSS HQGTVTSMEP NEGTFVLHTE NAKKGKIKPV HLVDVPGHSR  120
LRPKLEEFLP QAAAIVFVVD ALEFLPNCRA ASEYFFQTLS LSITHARDMF TSRKHKRNKY  180
LYDILTNANV VKKKIPVLLC CNKTDKLTAH TKEFIRKQME KEIEKLRSSR NAVSTADIAN  240
DFTIGIEGEV FSFSHCCNKV TVAEASGLNG ETVQPHPHPP PQQQIISDSD SDSGSDSDNH  300
QHRHNDVSNS IFKAYLDCHS SSSPSSIDLA KIQSFLASSS SGAVSCLICL ERIKRTDPTW  360
SCTSSCFAVF HLFCIQSWAR QCLELQSARA VTRPSSTPNE PEALWNCPKC RSSYQKSEIP  420
RRYLCYCGKE EDPPADNPWI LPHSCGEVCE RPLSNKCGHC CLLLCHPGPC ASCPKLVKAK  480
CFCGGVEDVR RCGHKLFSCG NVCDLVLDCN IHKCREICHD GDCPPCRERA VYRCCCGKVK  540
EEKDCCERLF RCEASCENKL NCGKHVCERG CHSGECGLCP YQGKRSCPCG KKFYQGLSCD  600
VAAPLCGGTC DKVLACGYHR CPERCHRGQC LETCRIVVNK SCRCGGMKKQ SRFLAIKSWC  660
VRGNAREREI VRAIHVDAVV VMVNVHHAQR GQCAPCPIMV SISCSCGETH FEVPCGTETN  720
QKPPRCRKLC HVTPLCRHGQ NQKPHKCHYG PCPPCRLPCD EEYPCGHKCK LRCHGPRPPP  780
NREFMIKPTK KMLNIHAEST PGSPCPRCPE LVWRPCVGHH LAAERMMVCS DKTQFACDNL  840
CGNPLPCGNH YCTFTCHPLD IRSSSLDKRS ESCEKCEVRC QKERTPRCQH ACPRRCHPED  900
CPPCKTLVKR SCHCGAMVHA FECIYYNTLS EKDQTKARSC RGPCHRKLPN CTHLCPEICH  960
PGQCPSPEKC GKKISVQFIF IRDVVTFTSW ILLASDIFSW IKVVVRCKCL TLKKEWLCKD  1020
VQAAHRVTGA DLKDVSKNQF GVGLLPCDSK CKSKLQMAES VLQQRNVKEI EEKEEPSGKN  1080
ATKRRKRRER GQDIKETSRL QKLAVATKKV AMLVMLIAVI VAVSYYGYKG ILWLSDWMNE  1140
VEEQRQKSRR YPRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6frk_v4e-15562705193SRP receptor beta subunit
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676738184
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529480.0AK352948.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-B22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423446.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2-like
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLV4N4Z00.0V4N4Z0_EUTSA; Uncharacterized protein
STRINGXP_010423446.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM109542730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors