PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676737798
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 313aa    MW: 33061.9 Da    PI: 10.2777
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676737798genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11113158555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P+       K +Ka++L + +eY++ Lq
  676737798 113 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 158
                99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.9E-17106167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-12106162No hitNo description
PROSITE profilePS5088817.028108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16110167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-9113158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-13114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080147Biological Processroot hair cell development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTSSLIQCQC SPLFLHAGTH LFLLLLLLLL LSRILSSTLS PSTPLSPTSS ITLRQQTLIL  60
HHKTPKFKNE SGGPTVGSQD GLPAQGTVST TSAPVARQKP RVRARRGQAT DPHSIAERLR  120
RERIAERMKS LQELVPNTNK TDKASMLDEI IEYVRFLQLQ VKVLSMSRLG GAGAAGPRLN  180
GLTSEVSSFS LLMAFKVGGR LNALAGPCNG VTGNVNATGS SNESLRSTEQ RVAKLMEEDM  240
GSAMQYLQGK GLCLMPISLA TAISSTSNHS RGALFNPNSN AVAAEEANVA VAVAAVAAPE  300
ASSTMDDVSA SKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMap676737798
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886141e-128AF488614.1 Arabidopsis thaliana clone bHLH082 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013619704.11e-142PREDICTED: transcription factor bHLH82-like
RefseqXP_013714012.21e-143transcription factor bHLH82-like
SwissprotQ9LSQ31e-141BH082_ARATH; Transcription factor bHLH82
TrEMBLA0A0D3ALB81e-143A0A0D3ALB8_BRAOL; Uncharacterized protein
STRINGBo2g028920.11e-144(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-110LJRHL1-like 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tam TH,Catarino B,Dolan L
    Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(29): p. E3959-68
    [PMID:26150509]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]