PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676737216

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

C2H2

Protein Properties

Length: 424aa MW: 46098.2 Da PI: 9.3029

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676737216	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.6e-05	206	228	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H 676737216 206 ACSQCGEVFPKLESLELHQAVrH 228 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.663	205	229	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	205	228	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.62E-14	239	420	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MALLTILPEN AEPPKHTPPP SKRKKRENPT EKLQKPQKPH KPQKQKTVPQ KQPSSWDQIK 60 NLLTCKQIEG SRVHDPSKNS QPGPPTTAHL SPSKLGSSCS SICSFRDVAH GNTRVVHRAD 120 NSPDVANSAT ADSETRLLTR KPGQQGSSSS SRSLMSGSTR SNASGSYTSS STTSFRAMQF 180 RKLSGCYECH MIVDPSRYPI SPRVCACSQC GEVFPKLESL ELHQAVRHAV AFCKCILPVS 240 ELGPEDSGRN IVEIIFKSSW LKKDSPICKI ERILKVHNTQ RTIQRFEDCR DAVKARALQT 300 TRKDARCAAD GNELLRFHCT TLTCSLGSRG SSSLCSNLPN CGVCNVIRHG FQGKSGAGGV 360 NDSTADEKKS TVEDNSTAGV SSSGGVFDSV AVNAGVYSNL EELVVYNPRA ILPCFVVIYK 420 VLES

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MALLTILPEN AEPPKHTPPP SKRKKRENPT EKLQKPQKPH KPQKQKTVPQ KQPSSWDQIK  60
NLLTCKQIEG SRVHDPSKNS QPGPPTTAHL SPSKLGSSCS SICSFRDVAH GNTRVVHRAD  120
NSPDVANSAT ADSETRLLTR KPGQQGSSSS SRSLMSGSTR SNASGSYTSS STTSFRAMQF  180
RKLSGCYECH MIVDPSRYPI SPRVCACSQC GEVFPKLESL ELHQAVRHAV AFCKCILPVS  240
ELGPEDSGRN IVEIIFKSSW LKKDSPICKI ERILKVHNTQ RTIQRFEDCR DAVKARALQT  300
TRKDARCAAD GNELLRFHCT TLTCSLGSRG SSSLCSNLPN CGVCNVIRHG FQGKSGAGGV  360
NDSTADEKKS TVEDNSTAGV SSSGGVFDSV AVNAGVYSNL EELVVYNPRA ILPCFVVIYK  420
VLES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676737216

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352975	0.0	AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013616458.1	0.0	PREDICTED: uncharacterized protein LOC106322857
Refseq	XP_013686988.1	0.0	uncharacterized protein LOC106390972
Refseq	XP_013686989.1	0.0	uncharacterized protein LOC106390973
TrEMBL	A0A3N6RY12	0.0	A0A3N6RY12_BRACR; Uncharacterized protein
STRING	Bo2g085310.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-179	C2H2-like zinc finger protein